Brachypodium distachyon (stiff brome): 100829683
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Entry
100829683 CDS
T01717
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100829683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100829683
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100829683
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
100829683
RNA polymerase I system
100829683
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
100829683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
Spt5-NGN
KOW4_SPT5
KOW6_SPT51-2
KOW7_SPT5
KOW
KOWx_SPT5
Spt5_N
KOW5_SPT5
GPKOW_C
SH3_KIN17_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
100829683
NCBI-ProteinID:
XP_003564120
UniProt:
I1GZX5
LinkDB
All DBs
Position
1:44879351..44886289
Genome browser
AA seq
1053 aa
AA seq
DB search
MARRGRDEDDDEVEEEEDEEEAYDLDEEEDEEDDYEEEARGRGKAAARSRGSGGGGGSGG
RKRSRQDNFIDDSAIEDDDEEDEDDDGGGRPRKKGGGGVRGFFDEEAQVDEDEEEEDEGE
GEDDFINDAGADIPDDDAARGSRSRHSIPMRDEEEDIEEIERQVRERYARSTHIEYGEEA
ADVEQQALLPSVKDPKLWMVKCAIGHERETAICLMQKFIDRTDLQIKSVVALDHLKNYIY
VEAEKEAHVKEACKGLRNIYASAKITLVPIKEMADVLFVESKTVDLSRDTWVRMKLGVYK
GDLAKVVDVDTVRQRVTVKLIPRMDLQALASKLEGREVVKKKTFVPPPRFFNIDEARELH
IRVERKRDKDSGEYFEMVDGLMFKDGFLHKTVSTKSIHTQGIQPTFDELEKFRKPGDDMN
GDMASLSTLFSNRKKGHFMKGDAVIVIKGDLKNLEGWVEKVEDTTVHIRPKLSDLPKTLA
FNEKELCKYFKPGDHVKVVSGVQEGATGMVVKVDGHVLIILSDTTKEHIRVFADHVVESS
EITTGITRIGDYELHDLVLLDNLSFGVIIRVETEAFQVLKGMPDRPEVVMVKLREIKSKI
DRRASAQDKSNNMISTKDVVRVVEGPCKGRQGPVEHIHKGILFIYDRHHLEHAGFICAKA
KQCLLIGGSNGGRRGNGMDAADARLGALRTPASILQSPGKLPPRGPYMNSGGRFGGGGRG
GRGYDALVGKCIKIKSGPYKGYRGRVKEVTGVLVRVELDSLMKIVTVKREDIADTPTVAT
PFREPRYSMGGETPMHPSRTPLHPFQTPMRDPGATPIHDGMRTPMRSRAWAPMSPPRDNW
EDGNPDTWGSSPAYHPGTPPARPYEAPTPGSGWANTPGVSYNDVPTPRESNYGNAPSPYV
PSTPVGQPMTPNSASYLPGTPGGQPMTPGNVGMDMMSPIIGGEGEVNWLLPDVLVNVLRA
GDDGPGIVREVLGDGSCRVALGSSGNGDIVTVLPNELEAVRPKKGDRIKILNGNFRGFVG
KLIGIDGSDGIVKLDDTYEVKILDMVILAKLAT
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggctcgacgcggacgcgacgaagacgacgacgaggtcgaggaggaggaggacgaggag
gaagcctatgacctggacgaggaggaggacgaagaggacgactacgaggaggaggcgagg
ggccggggtaaggcagccgcccgttcccgtggcagcggcggcggcggcggcagcgggggg
cggaagagatcgcgccaggacaacttcatcgacgactctgccatcgaggatgacgacgag
gaggatgaggatgacgacggcgggggccggccgaggaagaagggcggcggcggtgtgcgc
ggcttcttcgacgaggaggcgcaggtcgacgaggacgaggaggaagaggacgagggagaa
ggcgaggatgactttatcaatgatgcgggggccgacattcctgatgatgatgctgccagg
ggctccagatcgcgtcattctatccctatgagggatgaagaagaggatattgaggagatt
gagagacaagtacgagagagatatgcaagatctactcatatcgagtatggagaggaggcc
gcagatgtagaacagcaagctctcttgccatcagtgaaggatccaaagctctggatggtg
aaatgtgcgattgggcatgagagggagacagcgatttgtctaatgcaaaagttcattgat
aggacagatctccagataaagtctgtcgttgcattagatcatctaaaaaattatatttat
gttgaggcggaaaaagaggcacatgtcaaagaggcttgcaaaggtctacgaaatatttac
gcttccgccaaaattacattagttccgataaaagaaatggcagatgtcctctttgttgag
agcaagactgttgatctttcaagggatacttgggtccggatgaagctgggagtatataaa
ggtgaccttgctaaggttgttgatgttgatactgtacgccaaagggtaactgtgaagctc
atccctaggatggatctacaagctctggctagtaaactggaagggagggaggttgtaaag
aagaaaacgtttgtcccacctccaagattctttaatattgacgaggccagggaattgcac
attcgtgtagagaggaagcgagataaagattcgggagagtactttgagatggttgatggt
ttaatgttcaaagatggtttcttacataaaacagtctcgacaaaatcaatccacacacag
ggtattcagccaacatttgatgaactggagaagttcaggaaacctggcgatgacatgaat
ggggatatggcaagcttgtctactctgttttctaatcggaaaaaaggacacttcatgaag
ggtgatgctgtcattgttattaaaggcgatctaaaaaacttggaggggtgggtcgagaaa
gtagaggacactacagtccatatcaggccaaaattatctgatcttccgaaaacattagcc
ttcaacgaaaaagagctttgcaaatatttcaagcctggagatcatgtaaaagtggtatca
ggtgtccaagagggtgctacgggcatggttgttaaagttgatgggcatgtactcatcatt
ttatcagacacaactaaagaacatatccgtgtgtttgctgatcatgttgtggagagctct
gagataaccactggaatcaccagaattggcgattatgaactgcatgatcttgtgcttttg
gacaacttgtcatttggggttattataagagtggaaacggaagctttccaggttctgaaa
ggaatgccggatagacctgaagtggtgatggtaaaattaagagaaataaaaagcaaaatt
gataggcgtgcatcagcacaagataagtccaacaacatgatctctactaaggatgttgtc
agggttgttgagggaccatgcaagggaaggcaaggacctgtggaacacatacataagggg
atattgtttatatatgataggcaccaccttgaacatgcaggcttcatttgtgcaaaagca
aaacaatgccttcttataggtggatcaaatggcggacgtcgtggaaatggtatggatgct
gcagatgctagactgggtgctctgagaactccggcgagcattttgcaatctccaggaaag
ctgcccccaagggggccttacatgaattctggtggaagatttgggggaggtggtcgtggg
ggaagaggatatgatgccttagtgggtaaatgtatcaaaattaaatctggtccctataaa
gggtaccgtggccgtgttaaagaggtgactggggtgcttgtgcgtgtggagcttgattca
ctgatgaagattgtcacagttaagcgagaggatatcgccgacacacctactgtggcaaca
ccattccgtgaacctcgatattcgatgggtggtgaaacaccaatgcacccgtctagaacg
ccacttcatccctttcagactccaatgcgggaccctggagcaacgccgatacatgatgga
atgcgaactcctatgcgtagccgagcctgggctcctatgagccctccgagggataattgg
gaagatggaaatcctgatacttggggaagcagtccggcttaccatccaggaactccacca
gctcgaccatatgaagcccccacacctggctcagggtgggcaaataccccaggagtcagt
tataatgatgttccaactcctagagagagcaactacggaaatgctccaagcccatacgtg
ccttccacccctgttggtcaaccaatgacaccaaattctgcctcgtacctccctggtaca
cctggtggtcaaccgatgactccaggcaatgtaggcatggatatgatgtcccccataata
ggtggggagggtgaagttaactggctgttgccagatgttttggttaatgtgttgagggca
ggcgacgacggccctggtattgtcagggaagtcctcggagatggatcttgccgagttgca
cttgggtcgtcgggcaatggagatatcgtgacggttcttccaaatgagcttgaggctgtc
aggccaaagaagggcgacaggatcaagatcttgaatggcaacttccgcggattcgtggga
aaactcataggaatagatggttccgatggcatcgtgaagctcgatgacacatatgaagtc
aagatcttagatatggtgattttggccaaactggcgacttga
DBGET
integrated database retrieval system
