Brachypodium distachyon (stiff brome): 100829771
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Entry
100829771 CDS
T01717
Name
(RefSeq) protein RRP6-like 2 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100829771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100829771
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
100829771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
100829771
NCBI-ProteinID:
XP_010229177
UniProt:
I1H9J4
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All DBs
Position
1:complement(72009826..72016108)
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AA seq
665 aa
AA seq
DB search
MDGSKGAGEREAEEEEAGDGSQVAHGEKRKNKRPSGQDGGGGASGSAAAAIPGAASSART
ATSGDRPLGVAPAGAKARVAYHDPSIPRPQDVYLIRVNNCNLPFDHVWLEPSEDGTRRIH
PLEKLPLEQLIDRNVPEIEPVRPADVEDSPFTLVEDLKGLMELVDKLKDVNEFAVDLEHN
QYRSFQGLTCLMQISTRTEDFIVDTLKLRIYLGPYLQKHFKDPTKRKVMHGADRDIIWLQ
RDFRIYVCNLFDTGQASRVLQMERNSLEHLLHHFCGVTANKVYQNADWRSRPLSDEMIKY
AREDTHYLLYIYDLMRLRLQKESTCENDLLLEVQNRSNEICLQLYEKELLTDTSYLHIYG
LQEHELEAAQLAVVSALHQWRDYTARQEDESTGYVLPNKALIEIAKKMPTSTAELQRIVK
SKYPFVEANFDVILDIVWNATENSEAFEAIAEQLKKARLGELDLKSILASGEVIEMVPSD
ADNVGMNPDPADQYSAAPSTSNISLTSNRDSFMSETASNSAIRLYDNTQTISSSDNKTSW
TLAGLSRPINKEVDTQPTVQELKSPASFGDQVGNSASVIQTDYFGGFSNEQASGFYYPQI
PEYSSVIGWSHPEPEVLEAPGYLSGCYYGFPSINQSTGTGHPSASNREGDSQDPTRQHHF
PPAGN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggacgggtccaagggcgcaggcgagagggaggcggaggaggaggaggcgggggacggg
tcccaggtggcgcacggggagaagaggaagaataagaggccaagcgggcaggacggcggt
ggcggcgccagtggctctgctgctgctgccattcccggggccgcgtcgtcggcgaggacg
gccaccagcggcgacaggccgctcggggtggcccccgcgggggccaaggccagggtggcc
taccacgatcccagcatcccgcggccgcaggacgtgtacttgatcagagtgaacaactgc
aacctgcccttcgatcatgtctggctggagccaagcgaagatggcacccggcgtatccac
ccattggaaaaattgcctctggaacagcttattgacagaaatgttcctgaaattgaacca
gtaagaccagctgatgtagaggattccccgtttacgctagtagaagacctgaaaggctta
atggaattagttgacaagttgaaggatgtaaatgaatttgctgttgatttggagcacaat
caatataggtcatttcagggtttgacctgcttgatgcagatttcaacaagaacagaggac
tttattgttgacacccttaagcttcgcatataccttggtccctacttgcaaaaacatttt
aaagatccaaccaagagaaaggtaatgcatggggcagatcgtgatatcatctggctccaa
cgggacttcaggatatatgtgtgtaatctttttgacacaggacaggcttcgagggtcctg
cagatggagcgaaacagcctagaacacctattgcatcacttttgtggagtcacagcgaat
aaagtatatcaaaatgcagattggaggtcaaggccactttctgatgaaatgatcaaatat
gctagagaagatacacactatctgttgtatatatatgacttgatgagacttagactacaa
aaggaatcgacttgtgaaaacgatcttcttctagaggttcaaaatcgcagtaatgaaatt
tgcttacagttgtatgagaaggagctgctgacagatacatcatatctccatatatacggg
ttgcaggaacatgaattggaagcagctcagctggctgttgtttctgctctacatcagtgg
agagattatacagctcgtcaagaagacgagagcactggttatgtattaccaaataaggct
ttgattgagatagcaaagaagatgcctacatctactgcagagttacaaagaattgtgaaa
tcgaaatatccatttgttgaggctaattttgacgtaatcctggacattgtgtggaatgca
actgaaaattctgaagcctttgaagcaatagctgagcaactaaagaaggcacggctgggt
gagttagacttgaaaagtatactggccagtggtgaagttatcgaaatggttccttctgat
gctgataatgtgggcatgaatcctgatcctgctgaccaatattctgcagctccatcaact
tcaaatatcagtcttacttctaacagggatagctttatgagtgagacagcctcaaatagt
gctatccggctatatgacaacactcaaacaatatcatcatctgacaataagacctcttgg
accttagcaggcttgagtagaccaataaataaggaagtggacacacagcctactgttcaa
gaactgaagagtcctgcatcttttggagatcaggtaggaaattcagcatctgtaatacag
acagattactttggaggattttcaaatgagcaggcatcaggtttttactacccccagatt
ccagaatatagcagtgtaattggatggagccatcctgaacctgaagtcttagaggcccct
gggtacctgtctggttgttattacggctttccatcgataaaccaaagtacaggaacaggt
catccttctgcttcaaatagggaaggtgattcacaggacccaacaagacagcatcatttc
cctcctgcgggtaactga
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