Brachypodium distachyon (stiff brome): 100830086
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Entry
100830086 CDS
T01717
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100830086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100830086
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100830086
Spliceosome [BR:
bdi03041
]
Complex C
Other components
Step II factors
100830086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
Flavi_DEAD
AAA_24
SLFN-g3_helicase
AAA_30
nSTAND3
AAA_16
ResIII
T2SSE
ABC_tran
NB-ARC
Sigma54_activ_2
AAA_7
Cas3-like_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
100830086
NCBI-ProteinID:
XP_003563048
UniProt:
I1GU40
LinkDB
All DBs
Position
1:21665895..21674072
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AA seq
1258 aa
AA seq
DB search
MSTDGKIDLDATTSTLGPEDDTAQGLILPNKERVLYRPPPGKSALGLDLLAHRKREKEGN
NAFKPPPQKVLAASSLDEEPGSTENEASSLSGGDRGSVSRRYRGTNSSEKTSSKESTVTD
ENERGLTPRHRDESYRQQTHISRHDSYDDRGSGDKRSEREDSIGYSSSGKRGYRDDRETN
GRRSERDRSTSVDYANKKGRHEHSSRSSRTPARSDWDSGRWEWEDTPRREYRDDRPGSQR
HHPTRSPMLAAASPDARLVSPWLGGSTPRSAASPWDHISPSPTPVRASGSSKGSSYSSSR
EKSHQLTFSNNTEADGSPSAADRNHELTEEMMQEMDYNADRAWYDCEEHTTMFDGDNYLA
DDSSYKKKEAQLPKKLTRKDGSLMTLSQSKKLSQMTADNAQWEDRQLLRSGAVRGTEVQT
EFDDEDERKVILLVHDTKPPFLDGRVVFTKQAEPVMPLKDPTSDMAIIARKGSVLVREIR
EKQSMNKSRQRFWELAGSNLGNILGVEKTSEQVDADTAVVGDQGEIDFKEEAKFSQHLKE
KAEAVSEFAKSKSLAQQRQYLPIYTVRDDLLQVVRENQVVVVVGETGSGKTTQLTQYLHE
DGYTTTGVVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTCAKTIIKYMTDG
VLLRETLKDADLDKYRVIVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNADK
FSKFFGGVPVFYIPGRTFPVNILFSKTPCEDYVEAAVKQAMTIHITSGPGDILIFMTGQE
EIEATCYALAERMEQLISSSTKTVPNLSILPIYSQLPADLQAKIFQKAEEGTRKCIVATN
IAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPCSRAAADQRAGRAGRTGPGTCY
RLFTESAYQNEMLPNPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQENILNSMYQ
LWVLGALNNVGGLTEIGWKMVEFPLDPTLAKMLLMGERLDCLDEVLTIVSMLSVPSVFFR
PKDRAEESDAAREKFFVPESDHLTLLNVYLQWKSNQYRGDWCNDHFLHVKGLRKAREVRS
QLLDILKALKIPLTSCHMEWDVVRKAICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSA
LYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWLAELGPMFFSVKDTDTSLLDHKKRQK
EEKTAMEEEMEKLRQEQAEAALKEKERERAKRAKQQQQVSMPGLKKGSTYLRPKRMGL
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgatgggaagattgacctggacgccacgacgagtaccctggggccggaggat
gacacggctcaggggttgatcttgccgaacaaggagagggttctgtatcggcctccgcca
ggaaaatctgccctaggtttggacctccttgctcacaggaaacgagaaaaagaagggaat
aatgcatttaagcctcctccacagaaggtattggctgcaagttctttggatgaagagcca
ggatctacggaaaatgaggctagcagcttatcgggtggcgatcgtggcagtgtgtctcgg
cgttatcgaggaaccaattccagtgagaaaacatcgtccaaagaatctacagtcactgat
gagaatgaaaggggtcttacacctagacatcgagatgaatcctatcggcaacagacccac
atctcgaggcatgattcctatgatgacagaggatccggtgacaaacgtagtgaacgcgag
gattccattggctatagtagcagtggaaagcgaggataccgtgatgatagagaaacaaat
ggtaggcgcagtgaacgggatagatctacatccgttgactacgcgaacaagaagggtcgg
catgaacatagctcaagaagctcaagaacacctgcaagatctgattgggacagtggccga
tgggaatgggaagatacacctcggcgggagtaccgtgatgatcggcctggctcccaaaga
caccatccaacaaggtctcctatgctggctgctgcatcccctgatgcacgattggtgtct
ccttggctaggcgggagtacacctcgttcagcagcatccccatgggatcatatttctccg
tcgccaactcctgtgcgagcttcgggttcgtcaaaagggtcttcatattcaagttctaga
gaaaaatctcaccagcttaccttttcaaataatactgaagctgatgggagcccctcagct
gctgataggaatcatgagcttaccgaggaaatgatgcaagagatggattataatgctgat
cgtgcatggtatgactgtgaagaacacaccaccatgtttgatggtgataattatcttgcg
gatgatagttcctacaaaaagaaggaagcacagttgccaaagaagttgactcgtaaagat
ggcagtctgatgactctttctcagagcaagaagttatcacagatgactgcggataatgct
cagtgggaagacaggcagttgttgagatctggagctgttagaggaacagaggtgcagacg
gaatttgatgatgaggatgagcgtaaagtaatacttcttgttcatgacacaaaaccacca
tttctggatgggcgcgttgtatttacaaagcaagcagagcctgtaatgccactgaaggat
ccaacgtctgatatggctatcattgcccgcaaaggttctgttttggttagagaaattcgt
gaaaagcagagcatgaataagtcacggcaacgcttctgggagcttgcaggatctaatctt
ggaaatatattgggtgttgagaaaacgtctgaacaggttgatgcagatactgcagttgtt
ggtgatcaaggtgagattgatttcaaggaggaagcaaagttttcacagcacttgaaggaa
aaagcagaagctgtcagtgaatttgcaaaatcgaaatctcttgctcaacaaagacaatat
cttcccatatacactgtccgagatgacctgctacaggttgtgcgtgaaaatcaagttgtt
gtggttgttggcgaaactggttctggcaagaccactcaactgactcagtatctgcatgag
gatggatataccacaactggtgttgttggctgtactcaaccaagacgtgtggctgccatg
agtgttgccaagcgggtcagtgaagaaatggaaactgagcttggtgataaagtcggatat
gctattcgatttgaggatgttacttgtgctaagactataatcaagtatatgacagatgga
gtacttctccgtgaaaccttgaaagatgccgaccttgacaaatatcgtgttatcgtcatg
gatgaagcacacgagagatccctcaatactgatgttttatttggtatattaaagaaggtt
gttgcacgtcgacgggattttaagctaatcgtcacatcggcaaccctaaatgcagacaaa
ttctcaaaattctttggaggtgtacctgtattttacattcctggcaggacatttcctgtt
aatatcttgttcagcaaaacaccatgtgaagactatgtggaagcggcagtgaagcaggct
atgacaatccacataacaagtggccctggtgacatcctcattttcatgactgggcaggaa
gaaattgaagctacctgctatgctctagctgagcgaatggagcagctaatatcatcgtcc
accaagactgttcccaatctctccatcttgcccatatactcgcagttacctgctgacttg
caggccaagatctttcagaaggcagaagagggcactcgaaaatgcattgttgctactaac
attgctgagacatcccttacagtggatggtatcttctatgtcattgataccgggtatgga
aagatgaaggtatacaatccacggatgggcatggatgctcttcaggtttttccatgtagt
cgagcagctgcagatcagcgtgcaggacgggcaggaagaactggtcctggcacatgctac
aggctgttcacagaatcagcttaccagaatgagatgctccctaaccctgtgccagagatc
caaaggactaacctggggaatgtggttctcttactgaaatccctcaaagtcgaaaacttg
cttgattttgacttcatggacccaccgccccaggagaatatccttaactccatgtaccag
ctctgggtgttgggtgccttgaacaatgttggtggccttacagaaataggttggaagatg
gtggaattcccgttggaccccactcttgcaaagatgcttcttatgggggagaggctggat
tgccttgatgaagtattgactattgtatccatgctctcggtgccctcagttttcttccgg
ccaaaagatagagcagaggagagtgacgccgcaagggaaaaattctttgtaccagagtct
gaccacctgacactcctgaatgtctaccttcaatggaaatcaaatcaataccgtggagac
tggtgcaatgatcatttcctccatgtcaagggtctccgtaaagctcgggaagtgagatct
cagttgctggacatactgaaagccctgaagatcccactgacctcatgccatatggaatgg
gacgtggtgagaaaggctatctgctcagcatacttccataactctgcaagattgaagggc
attggagagtatgtcaactgccggaatgggatgccatgccacctgcatcctagcagcgca
ctctatggtctcggctacacccctgactatgtcgtctaccatgagcttgtcctgacaacc
aaggagtatatgcagtgcgtcagcgcagtggacccgcagtggctggcagagctgggcccc
atgttcttctctgtaaaggatacggatacgtccctcctagaccacaagaagaggcagaag
gaggagaagactgccatggaagaggagatggagaagctaaggcaggagcaagctgaggcg
gcacttaaggagaaggagagggagcgagcgaagagagccaagcaacagcagcaagtttca
atgccgggcctgaagaaaggttcgacatatctgaggcccaagcggatgggtttgtag
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integrated database retrieval system
