Brachypodium distachyon (stiff brome): 100830414
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Entry
100830414 CDS
T01717
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100830414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100830414
03012 Translation factors [BR:
bdi03012
]
100830414
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100830414
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100830414
Translation factors [BR:
bdi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
100830414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_16
AAA_19
ATPase
T2SSE
NACHT
PhoH
Motif
Other DBs
NCBI-GeneID:
100830414
NCBI-ProteinID:
XP_003567582
UniProt:
A0A0Q3FW65
LinkDB
All DBs
Position
2:833999..843976
Genome browser
AA seq
1247 aa
AA seq
DB search
MLLASSVLRGRLRPLRRPRPLIMPSPLFLSRNPNPSPGSNGASLLPSPSPHHSSSAAMST
GGGGGVYVPPMRRLRSVIASTNGSLAPPPLAQPAWTPEWRADGRSNSPPSPPQQQQRRAA
PLPPRPPPPQQPPLRQQSAGYARYAYDDFSEDESDREMDRSSASSKGASTLDNVDEWKWK
LHMLLRNDDEQEIISREKKDRRDFEQLAQLADRMALHSRQYSRIIVFSKVPLPNYRSDLD
DKRPQREVSIPSGLQREVDALLADYLARKRTNSGNFPNAAFSRSSSTDSFVTDESFYDQP
DNQASANVVLERIQKRKSLQLRNQQAAWQESNDGQSMMEFRRSLPAYKERQSLLDAISRN
QVVVVSGETGCGKTTQLPQYILESEIDAARGATCSVICTQPRRISAITVSERVAAERGEK
IGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVIVDEIHERGMNEDFL
LIVLKDLLPRRPELRLVLMSATLNADLFSSYFGGAPMIHIPGFTYPVRSRFLEDILEVTG
HRLTSYNQIDDYGQEKSWKMQKQAIRKRKSQIASVVEDAVKAADLRDYSSRTRDSLSCWN
PDSIGFNLIENVLCHICQKERDGAVLVFMTGWDDINALKEQLQANPLLGDPNKVLLLACH
GSMPSSEQKLIFEKPEAGLRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTPC
LLPTWISKASARQRRGRAGRVQSGECFHLYPQCVYNAFADYQLPELLRTPLQSLCLQIKS
LRLGSISEFLSRALQSPESLSVQNAIEYLKVIGAFDQNEELTVLGRHLSMLPVEPKLGKM
LILGAIFNCLDPILTIVSGLSVRDPFMTPFDKKDLAESAKLQFSCRDYSDHLALVRAYEG
WREAERDRNGYDYCWKNFLSVQTLKALDSLRRQFVFLLKDTGLIDENMTRCNKWSRDENL
VRAVICAGLYPGVSSVVNKEKSISLKTMEDGQVMLYSSSVNGKEAKIPFPWLVFNEKVKV
NSVFLRDSTAISDSILLLFGGNIQQGGLDGHLKMLGGYLEFFMSRDLASTYLNLKSELED
FIHCKLQNPKMDIQTSEELLSAVRLLVTEDPCSGRFVYGRQEPRSKKAKTMTSLASASMD
RGGGHGGDNPKNQLQTLLTRAGHGNPSYKTKQIKNSLFRSTVEFNGMQFVGQPCANKKLA
EKDAAGEAINWLTGGGAPSDSRDPQDADHMSMLLKPTRRKRHHFRRT
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgctcctggcatcctccgtccttcggggtcgcctccgcccgctccgccggccccggccc
ctgatcatgccctctcctctcttcctctcccgaaaccctaaccccagcccgggcagcaac
ggcgcgagcctcctccccagccccagcccccaccactcgtcctccgcggccatgagcacc
ggcggcggcggcggcgtctacgtgccgccgatgcgccggctccgctccgtcatcgcgtct
accaacgggagcctcgcgccaccgccgctggcacagccggcgtggacgccggaatggcgg
gccgatgggcgctcgaacagcccgccgtcgccgcctcagcagcagcagcggcgtgcggcc
cctctcccgccccggccgccgccaccccagcagccgcccttacgccagcagagcgctggg
tatgctcggtatgcgtatgatgacttctccgaggatgagtcggatcgggaaatggaccgc
tcgtcagcgtccagcaagggtgcatccactttagataatgttgatgagtggaaatggaaa
ctgcacatgcttctccgaaacgacgacgagcaagagattatctcaagggaaaagaaggac
aggcgtgattttgaacaacttgcccaactggcagatcgaatggctttgcacagccgtcag
tattcccgaatcatcgtgtttagtaaggtcccgttgccaaattatagatcagaccttgac
gacaaaagacctcagagagaggtatctataccttccggcttgcaaagagaagttgatgca
ttgcttgcggactatcttgcaaggaagagaacaaacagcgggaacttccctaatgctgcc
ttctcaaggtcaagcagcacagacagttttgtgactgatgaaagcttctatgaccagccg
gataatcaggcatcagctaatgttgtgttggagagaatccagaaaagaaaaagcctacag
ttgcgtaaccagcaagctgcttggcaggaatcaaatgatggtcaaagcatgatggagttt
cgccgtagtcttcctgcttataaagaaaggcaatcattattggatgctatatctcggaac
caggtggttgtagtttcaggtgaaactggctgtggtaagacaacacagctgccacaatac
attttggaatctgaaatagatgctgctcgtggtgctacttgcagtgttatttgcactcaa
ccaagacgaatatcagcaattaccgtttctgaaagagttgctgctgaaagaggtgaaaag
atcggggaatcggttggctacaaagttcggttggaaggaatgcgaggaagagatacacgc
ctacttttctgcaccactggagtcctgttacggagattgctggtagacagaagcttgaaa
ggtgttacccatgttattgtggatgaaatccatgaacggggcatgaatgaagattttcta
cttattgtcctaaaggacctccttccacgccggcctgagctaagacttgtattgatgagt
gcaaccctcaatgcggatctattctcttcatacttcggtggagcacccatgatacatata
cctggtttcacataccctgttcggagtcgttttctagaagatatacttgaagttactggg
cacagattgacttcatacaatcagattgatgactatggtcaagagaaaagttggaagatg
caaaagcaagctataaggaagaggaagagccaaattgcttctgttgtcgaagatgcagtt
aaagctgctgatttaagggactatagttcgcgaactcgtgactcgctatcctgctggaat
cctgattcaattggttttaatttaatagaaaatgtcttgtgccatatttgtcaaaaggaa
agagatggtgctgttcttgtcttcatgactgggtgggatgacattaatgcgctaaaagag
caactgcaagcaaatccattgcttggagaccctaataaagttttgctgcttgcctgtcac
ggttcaatgcctagctcggagcagaaactaatatttgagaaacctgaggctggtttaagg
aaaatagttcttgctaccaatttggctgaaactagtattactatcaatgacgtagttttt
gttgttgattgtggaaaagcaaaagagacatcttatgatgcactgaataataccccctgt
ttgcttccgacctggatctccaaggcttctgctcgacaaagacgaggaagagctggccga
gttcaatcaggagagtgtttccatctttacccacaatgtgtatataatgcctttgctgac
taccagttgccggaacttctgagaacccctctccaatccctctgtttgcaaataaaaagc
ttgcggcttgggagcatctcagaatttttatccagagctttgcagtcacctgagtctcta
tcggtacaaaatgccattgaatatctcaaagttatcggagcatttgatcagaatgaagag
ttgacagttctaggaagacacttgtctatgcttccagttgagcctaaattgggcaagatg
cttattttgggggctatttttaattgccttgatcccatattaaccattgtttctggacta
agcgttagagatccattcatgaccccatttgacaagaaggatcttgccgagtctgctaaa
ttacagttttcatgccgtgactatagtgatcacctcgcgcttgttcgtgcatacgagggt
tggagagaggctgaaagagatcgcaacggctatgactactgctggaaaaactttctgtcc
gtgcaaaccttgaaagccctagattcccttcggaggcagttcgtttttcttctaaaggac
actggtttgattgatgaaaacatgactaggtgcaataaatggagtcgtgatgaaaaccta
gttcgggcagtcatttgtgcgggactatacccgggtgtttcatctgttgttaataaagag
aagtcaatttctctcaagacaatggaggatgggcaggttatgctttactcgagttcagtc
aatggaaaagaagccaaaattccatttccctggctagtgttcaatgagaaggtgaaggtg
aattcagtgtttctccgggattcaacagctatatctgattctatactgttgctctttgga
ggaaacatacaacaagggggcttggatgggcacttgaaaatgctcggaggatatctggaa
ttcttcatgagccgtgatctcgcatcgacttacttgaatctcaagagtgaacttgaggat
ttcatccactgcaagcttcaaaacccaaagatggacatccaaaccagtgaggaactgcta
tcagctgtacgcttgctggttacggaggacccatgcagtggccggtttgtctacggtcga
caagaaccaagatcaaagaaagcgaagacgatgacctcattagcctcagcctccatggac
cgtggaggtggacatggaggggacaacccgaagaaccagctccaaactctcctaacaagg
gccgggcatggcaacccgtcctacaagacgaagcagatcaagaacagcctcttcaggtca
acggttgagttcaatggcatgcagtttgtagggcagccatgcgccaacaagaagctcgcg
gagaaggacgcggcaggagaggccatcaattggcttacaggaggaggagctccctctgac
tcaagagacccacaagacgcggaccacatgtccatgctgctgaagccgacacgcaggaag
aggcaccattttaggaggacttga
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