Brachypodium distachyon (stiff brome): 100830518
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Entry
100830518 CDS
T01717
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100830518
09122 Translation
03013 Nucleocytoplasmic transport
100830518
03015 mRNA surveillance pathway
100830518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100830518
03041 Spliceosome [BR:
bdi03041
]
100830518
03009 Ribosome biogenesis [BR:
bdi03009
]
100830518
03012 Translation factors [BR:
bdi03012
]
100830518
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100830518
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100830518
mRNA cycle factors
Stress granule specific factors
100830518
Spliceosome [BR:
bdi03041
]
Complex C
Other components
EJC/TREX
100830518
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
90S particles
Helicases
100830518
Translation factors [BR:
bdi03012
]
Eukaryotic type
Initiation factors
eIF-4
100830518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
Cas3-like_C_2
AAA
Transposase_23
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
100830518
NCBI-ProteinID:
XP_003570724
UniProt:
I1IFR0
LinkDB
All DBs
Position
3:complement(59207086..59210539)
Genome browser
AA seq
410 aa
AA seq
DB search
MAAAGATTSRRGPGGGGGAMDDENLTFETSAGVEVVTSFDAMGIRDDLLRGIYGYGFDKP
SAIQQRAVLPIITGRDVIAQAQSGTGKTSMISLSVCQIVDTSVHEVQALILSPTRELATQ
TEKVMQAVGNYMSVNVHACVGGKSIGEDIRKLESGVQVVSGTPGRVCDMIKRRTLRTRAI
KLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHDILEITSKFMTDPVRILV
KRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRTNN
FTVSAMHGDMPQKERDAIMNEFRGGSTRVLITTDVWARGLDVQQVSLVINYDLPNNRELY
IHRIGRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgggggcgaccacctccaggcgcggccccggcggcggcgggggcgccatg
gacgacgagaacctcaccttcgagacctcggcgggggtcgaggtggtcaccagcttcgac
gccatggggatccgcgacgacctcctccgcggcatctacggctacggcttcgacaagccc
tccgccatccagcagcgcgccgtgctccccatcatcaccggacgcgacgtcatcgcccag
gcgcagtccggcacggggaagacatccatgatctccctctccgtctgccagatcgtcgac
acctctgtccacgaggtgcaggcattgatactgtcgcccactagggagcttgccacacaa
acagagaaagtgatgcaagctgttggtaactacatgagtgtgaatgtgcatgcttgtgtt
ggtggcaaaagtatcggtgaggatattaggaagctcgagtctggagtgcaagttgtgtca
ggaacaccgggcagagtttgtgatatgatcaagaggaggaccttgcgcacaagagccatc
aagctcctagttctggatgaagccgatgagatgttgagtagaggttttaaggatcagata
tatgatgtctacagatatctccccccagaacttcaggttgttttgatttctgcaactctg
ccccatgacatcttagagataactagcaagttcatgactgatccagtcaggatccttgta
aagcgtgatgagttgaccttagagggtatcaaacaattctttgttgctgttgagaaagag
gaatggaagtttgatacattgtgtgatctttatgatacgctgaccatcacccaagctgtc
attttctgcaatactaagagaaaggtggattggcttacagaaagaatgcgcaccaacaac
ttcactgtatcagctatgcatggtgacatgcctcaaaaggaaagagatgccattatgaat
gagttcaggggtggttcaacccgtgttctaatcacaacagatgtctgggctcgagggctg
gatgttcagcaggtctctcttgtcattaattatgatctcccgaataatcgtgagctctac
atccatcgtatcggtcgatctggacgttttgggcgcaagggtgtggcgatcaatttcgtg
cgcaaggacgacatccgtatactgagggacattgagcagtactacagcacacagattgat
gagatgccgatgaatgtcgccgatcttatctga
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