Brachypodium distachyon (stiff brome): 100830636
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Entry
100830636 CDS
T01717
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi04142
Lysosome biogenesis
bdi04145
Phagocytosis
bdi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
100830636
04142 Lysosome biogenesis
100830636
04148 Efferocytosis
100830636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bdi04131
]
100830636
Membrane trafficking [BR:
bdi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100830636
Hops complex
100830636
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-RING_Vps41
zf_RING_Vps8
zf-RING_11
Nup54_57_C
zf_RING_Vps8_fungal
zf-RING_UBOX
zf-rbx1
Beta-prop_VPS8
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
100830636
NCBI-ProteinID:
XP_003571407
UniProt:
I1I140
LinkDB
All DBs
Position
3:complement(13821368..13829343)
Genome browser
AA seq
991 aa
AA seq
DB search
MDAGQLFSVDPLERQAARGHGAVTSMAAGSDVIVLGTSRGWLVRHDFSFEDAQDLDLGGG
RSGEHAVHRVFLDPGGKHCVVTVIHPGGAETYYHHARWPRPKLLPRLRGLLVNAVAWNRQ
SITEASTKEVILGTESGQIFEMAVDEADKKEKYVKLLFELTELREGIKDLQMETATAGIA
TRYYVMAVTPTRLYSFTGIGSLETVFASYSDRAIHFMELPGEIPNSELHFFIKQRRAKHF
GWLSGAGIYHGELNFGAQHSSTSGDENFVENKGFFDYSKLGDSGMKPRSFALSEFHFLML
IGDKIKVVNRISQQIVEELVVDNTPESSKGIIGLCSDASTGIFYAYDDNSIFQVSTSDEG
RDMWQVYLDMKAYPVALSHCRNSFQRDQVYLVQADAAFAAKEYYIAASFYAKMNYILSFE
EISLKFISVGEQDALRTFLLRRLDNLTKDDKMQITMISTWATELYLDKINRLLLEDGTGT
TTNVVADSPNSEYRSVVNEFRAFLSDSKEVLDEATTMLLLESYGRVDELVYFAGLKEQYE
IVVHHYIQQGEARKALEVLQRHNVPVDLVYKFAPDLIMLDAYETVESWMMARSKLSPGKL
IPAMMRYVSEPHAKNETHEVIKYLEFCVKDLNSEDPGVHNLLLSLYSKKADESQLLQFLD
TKFGNGQANGPEFFYEPQYALRLCLQEKRMRACVRIYSMMSMHEEAVALALRVDLELAKA
EADKVEDDEELRKKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNLLKIEDILPFFPD
FVLIDDFKEEICKSLKDYNSQIEQLKQEMDDATRGADNIRSDIGALAQRYTVIDREEECG
VCRRKILTVGGLHQVGRSYTSVGHMAPFYVFPCGHAFHANCLIGHVTRCTSQAQAEKILN
LQKQLSLMDRKAAKENGGTANGESVMSTTPVDKLRSQLDDAVASECPFCGDLMIKEISLP
FIRPEESVEKASWEIKPQPTAQKILPMTMSI
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggacgccggccagctcttctccgtcgaccctctcgagcgccaggccgcgcggggccac
ggcgccgtcacctccatggccgccggcagcgacgtcatcgtcctcggcacctcccgcggc
tggctcgtccgccacgacttctccttcgaggacgcccaggatctcgacctcggcggcggc
cgctccggcgagcacgccgtgcaccgggtgttcctggaccccgggggcaagcactgcgtc
gtcacggtgatccatccggggggcgccgagacgtactaccaccacgccaggtggccgcgc
cccaagctgctgccccgcctccgcggcctcctcgtcaatgccgtcgcctggaatcgccag
tccatcaccgaagcgtcgaccaaggaggtgatccttgggacggagagtgggcagatcttc
gagatggcagtggacgaggccgacaagaaggagaagtatgtgaagctgctctttgagctc
accgaactgcgagagggcatcaaggacctgcagatggagactgcaacggctgggattgcc
acaagatactatgtgatggctgtcacgcccacacggctctactcgttcaccggcattggt
tcactggaaactgtttttgcaagctattccgaccgtgccatccacttcatggagctccca
ggagaaatacctaatagtgaactacacttctttatcaagcaaagaagggctaaacacttt
ggatggctttctggagctggaatttatcacggtgaacttaattttggagctcaacacagc
tctactagtggagatgagaattttgtggaaaataaaggtttctttgactattcaaaacta
ggagattctggcatgaaaccaagatcatttgcactatctgagtttcattttctgatgttg
attggggacaagattaaggtagtgaacagaattagtcagcaaattgtggaggaacttgtc
gttgacaatacaccagaatcttcaaaaggaatcattggactttgtagtgatgcatcaaca
ggaattttctatgcatatgacgacaactctattttccaggtttctacatctgatgagggt
cgtgacatgtggcaagtatacttggatatgaaggcatatcctgttgctttatcccattgc
cgtaactctttccagagggaccaagtttacctagtgcaggctgacgctgcatttgctgca
aaagaatattacatagcagcatctttctatgcaaagatgaattatatcctttcatttgag
gagatcagtttaaagtttatatctgtaggtgagcaggatgctctcaggactttcttgttg
agaaggcttgataatctcacgaaagatgacaagatgcagataacaatgatctcaacttgg
gctactgagctgtacttagacaagattaatcgtctcctgttggaagatggcacaggcacc
acgacaaatgtggtagcagattcccccaactcggaatatcgttcagtagtaaatgaattc
cgtgcatttcttagtgatagcaaagaggtactagatgaagcaacaactatgttattattg
gaaagttatggtagagtagatgagctggtgtattttgctggcttgaaggagcaatatgaa
attgtggttcatcattacattcagcaaggagaagcaagaaaagccttggaagtgcttcaa
cgacataatgttccagtagaccttgtgtataaatttgctccagatttaatcatgctagat
gcttatgagacagtggaatcatggatgatggcaagaagcaagttgagtccagggaagctt
ataccagcaatgatgcgttatgtgagcgaaccgcatgccaagaatgaaacacatgaggtc
attaaatacttggaattttgtgtcaaagatttgaacagtgaggatcctggagtgcacaat
ttgttgctttccttgtattccaagaaggcggatgagtcccagcttttgcaatttctcgac
accaagtttggtaatggacaagcaaatggccctgagttcttttacgaaccccagtatgct
ctgcgtctatgtctccaagagaagagaatgcgtgcttgtgttcgtatttacagtatgatg
tccatgcatgaggaagctgtggcacttgctttgagggtggacttggagctggcaaaggca
gaagcagacaaagttgaagatgatgaagagcttaggaagaagctatggcttaaggttgca
aaacatgtcattgagcaagagaaaggagtcaagagagagaatataaagaaagctatagaa
ttcctttcggagactaacaacttgctgaagattgaggacatcctgccatttttcccagac
tttgtattgattgacgattttaaagaggaaatctgcaaatctctcaaggactataacagc
cagattgagcaattgaagcaggagatggatgatgctacgcgtggggcagacaacatcagg
agtgatatcggtgcccttgctcagagatacactgtaattgatcgcgaggaggaatgtggg
gtatgccggcgcaaaatattgactgtgggaggattgcaccaggtaggaagaagctataca
tctgttggacacatggcccccttttatgtgtttccctgtggacacgccttccatgcgaat
tgtttgattggccatgtaactcgttgcactagccaagcacaagctgagaaaatactaaac
cttcagaagcagctcagcttaatggacaggaaagcagcaaaggaaaatggtggaactgcg
aacggcgaatctgttatgagtacaacaccggttgataagctgaggtcacagttggatgat
gctgtggcaagcgagtgcccgttctgcggcgatctgatgatcaaggagatctctctgccg
ttcattcggccggaagagtcagtcgaaaaggcttcatgggaaatcaaaccgcaacccacg
gctcagaagattctcccaatgaccatgtcaatatga
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