Brachypodium distachyon (stiff brome): 100830650
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Entry
100830650 CDS
T01717
Name
(RefSeq) nuclear pore complex protein NUP160
KO
K14303
nuclear pore complex protein Nup160
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100830650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100830650
03036 Chromosome and associated proteins [BR:
bdi03036
]
100830650
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100830650
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
100830650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
HEAT_Nup120
TPR_Nup160_C
NUP160_helical
Beta-prop_WDR35_2nd
Polysacc_deac_1
Motif
Other DBs
NCBI-GeneID:
100830650
NCBI-ProteinID:
XP_010233798
UniProt:
I1HX48
LinkDB
All DBs
Position
3
Genome browser
AA seq
1522 aa
AA seq
DB search
MATPAPAPASRRIAGTEVPITGSDKIRWIDLTVPSSSSAPESATDPFVSVPPRAASGCHI
VYPGSDSQRYLAWRIHEEHQNVLEVIELCASKEFPSSGLRLIFEEELCPFAFICESEGAR
RDKSVYLLYVVTVSGVAFLCNLHSPFSYVSGSILAQNDIVEFSLQTLTQSAKVTAVKAKP
GCLVIGRQDGSICCYSLGKVAPCSPGFSNELRDDAGIGRLWTLMSRTKAVGPVQDIETAI
VNERELLFVLHLDGSLRVWDIFSHTKVLNYNVQSNGFEGQPSRLWVGEADDDQELITLAV
LHQGTVVPACDRVAVYGFSFGAGEKFLLSPEPSVFDVPLLEGKLVDLKISTEKLWILKEV
GPMLYEIVQYDTDTGEMCSYVLQEDAISEQMFQSSESALDDLVWTADSIFSSTKEHSFSF
ISSMFLRRLLQPGVNHWCALRETLLEYKRFLSDSEFQSLTTSGLGKEILSIIEQEESSQT
ASSTAYHWKKFSARYLHNWCRNNRPYGLLLDTNGEVFGLIRKGSFSLFRCLERVEQLIYG
FSDELGNLNGLELTILSEKSETEILIEVLTCMGHIHHLLGRSSAAIYHESLISSVISLDE
IASQILKILETGFSPQSSSALIALLGTDAYVERRQIAHKSQRKFSVEMLLSFQKLQSRSI
SWPAVFDVIERFMKYLNTELTRQECESKRVCNINSMLLVQATSQVARTMFESAFDLFLFL
RYLVGVGGQVSLLQSDAARIKLKLLPMIQDILGQWIVLHFIGISPTMPPTIEDFSYQLSS
LQLGIADELSLHRKLGSSDFTLACLLDFPKSAEGDALSPCFPTPAEVINLVRRFSSSIMC
RSNVEHVDGFLDTSWVHSFLGSTINLAALFVRHGQYGAAENLLGILETYWNNGRASQTDK
DTDIASLARLHLNGFCLLMLAHDEANIVLKESKVHEAIRCFFRAASGQEAPKALKKFSSE
TGFQFSGECRSISLWRLHYYEWAMQIFEQHSMSEGACQFALAALEQVDSIFYLNNGSDAE
DLPETAAMIKGRLWANVFKYSLDLKKFHDAYCAIISNTDEDSKYVCLRRFIIVLCELGET
KVICSGEIPFTGLVEKVEQELFWKAERSDLSSKPNLYKVLYSFEAYRNNWRKAAAYMYRY
FVRLSREGNAGGTLQLSHVLQERLHALAAAINSLQLVDPSSAWLDSVCEADDQISPSKKP
RNLLMENSAFGTDSERSRLQFCVDIEILEKEYTLTEALYMLSTVNSRSNFSESYSIETLT
DILINENLYDLAFTIVLKFWKDSGMKRELERVFAAIAQQCCPNKVGNSGRDLTGSQQLLL
LPSSQDDAWDDNNKSIAVAHQVRGSCQWETLEIYLDKYTDLHPRLPVIVAETLLYTDPEI
ELPLWLVQMFKTSKGGNRMISWGMSGKEADPAALFRLYINYGRHTEATNLLVQYLDSFAS
SRPVDVLHRKKMSAAWFPYTTIERFWSQLEEMQSAGHSVDQCDKLKKLLHGALMNHLQQV
VVDSEDVLSSVGGGQGTESQSS
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atggcgacccccgcccccgcccccgcctcccgcaggatagcgggcaccgaggtccccatc
acaggctcggacaagatacggtggatcgacctcaccgtcccttcctcctcctccgcgccg
gagagcgccacggacccattcgtctccgtgcccccacgcgctgcctcggggtgccacatc
gtgtaccccggcagcgattcccagcgctacctcgcctggaggattcatgaggaacaccaa
aatgtgctagaggttattgaactctgtgcttccaaggagtttcccagctctggactgcgg
ttgatatttgaggaggagctatgcccattcgcttttatatgcgaaagtgagggtgccaga
agggacaagtctgtatatttactatatgtggttactgtttctggagttgctttcttgtgc
aacttgcacagcccattttcctatgtatctggctcgatactggctcaaaacgatatagtg
gaatttagtctccaaaccctcacacagagtgccaaggttacagctgtaaaagcaaagcct
ggatgtctggttattgggcgccaagatgggtcaatctgttgttacagtcttggcaaagta
gctccttgttcaccaggtttctcaaatgagctccgtgatgatgctggaatcgggcgtttg
tggactctcatgtcaagaacaaaggctgtgggacctgtgcaagatatagagacagctatt
gtaaatgaaagggaactgttgtttgttcttcatttggatggaagtttgcgtgtatgggat
atttttagtcacacgaaagttcttaattataacgttcagtcgaatggttttgaagggcaa
ccctctaggctatgggttggtgaggccgatgatgatcaagagctgataactttggcagtt
ctacatcaaggcactgtggttccagcttgtgatcgtgttgctgtatatggcttcagtttt
ggtgccggagagaagttcttgttatcccctgagccttcagtgttcgatgtacctttgctg
gagggaaagcttgttgatttgaaaataagcacagaaaagctttggatacttaaagaagtt
ggaccaatgctctatgaaatagtgcagtatgacactgatactggggaaatgtgttcatat
gtgcttcaagaagatgctatcagtgagcaaatgttccaaagttctgagagtgcattggat
gatttggtctggactgccgattcaatattctcttctacgaaggagcatagtttcagtttt
atctcatccatgtttctgcggaggctactgcaaccaggagtgaaccactggtgtgctctt
cgcgaaaccttactggagtacaaaaggttcctatcagattccgagttccagtcactcaca
actagtgggctagggaaagaaatattatccattatagaacaagaggaaagttcacagact
gcaagttctactgcttatcactggaaaaagttctctgcccggtatctccacaactggtgc
cggaacaatcggccatatgggttgcttcttgacactaacggtgaagtgtttggtttaatt
agaaagggttcattttctctcttccgttgtttggagcgtgtggagcaacttatttatggt
ttctctgatgaattgggaaatctcaatggccttgaattgaccatattgagtgaaaaatct
gaaaccgaaatcctcattgaagttctcacatgcatgggccatattcaccatttgctgggg
agatcttctgctgcaatatatcacgagtccctcatcagttctgtcatatcacttgatgaa
attgcttctcagatactaaagattctagaaacgggtttcagtcctcaatcttcgtcagcc
ctcattgcattacttggaacagatgcttatgtagaaagaaggcagatagctcacaaaagc
caaaggaaattttctgttgagatgttactatcgttccagaagttgcaatcaagatccata
tcctggccagcagtgttcgatgtgattgagaggttcatgaagtatttgaacacagagtta
accagacaagagtgtgaatcaaagagagtttgtaatataaattctatgttattagttcag
gctacttcacaggttgcaagaacaatgtttgagtctgcttttgacctatttctgttcctc
agatatctggttggtgtcggtgggcaggtctccttgttgcaaagcgatgctgctagaata
aaattgaaattgttgccaatgattcaagacatattgggacagtggattgttctccatttt
ataggaatttcaccaaccatgccaccaacaatcgaggatttcagctatcaactctcttct
ctccagctaggtatagctgatgagctgtctttgcacagaaagcttggctcctctgatttt
acattggcttgtttgctcgattttcctaaatctgctgaaggggatgctctgtcaccatgt
tttcctactccagccgaggtgatcaacttggtcaggaggtttagcagttcaattatgtgc
agaagtaatgttgaacatgtagacggtttcttggatacctcatgggtacacagtttcttg
ggttccacaatcaatctggcagcactttttgtccgtcatggtcaatatggagctgctgag
aatcttctgggcattctcgaaacatactggaacaatggaagagcatcccaaactgacaag
gatactgatattgcaagtttggcacggttacatctcaacggattttgccttttgatgctt
gcacatgacgaagcaaatatcgttttgaaagaatcgaaggtccatgaagctatcagatgc
ttcttcagagctgcatctggacaggaagctccaaaggctttgaagaagttttcttcagaa
acagggtttcaattttccggggaatgtagatccatttctttatggaggcttcattactac
gaatgggcaatgcaaatttttgagcagcactccatgagtgagggagcatgccagtttgct
cttgctgctcttgaacaagttgatagcattttttatttgaacaatggaagtgatgccgag
gatcttccagagactgcagcgatgattaaaggacgattatgggcgaacgtattcaaatac
agcttagatttgaaaaagttccatgatgcatattgtgctataatttcaaatacagatgaa
gatagcaagtatgtctgtttgaggcgtttcatcatagttctttgtgagcttggcgaaaca
aaggttatttgcagtggtgagataccattcactggtttggtggaaaaagtggagcaagag
ctcttctggaaggctgagcgctcggatctatcttccaaaccaaatctgtacaaggtcctt
tattcatttgaagcctataggaacaattggaggaaggcagctgcatacatgtacaggtat
tttgttagattgagtcgggaggggaatgcaggtggaaccctccaactttctcatgtattg
caagagagattgcatgctttggctgctgctatcaactcgttgcagcttgttgatccctca
tctgcctggcttgattcggtttgtgaagctgatgatcaaatttcacccagcaagaagcct
cgtaatcttttgatggagaactctgcttttggcacagattcggagcgctctcgattgcaa
ttttgtgttgacattgaaattcttgagaaggaatatacactaacagaagcactttatatg
cttagtactgtaaattctagatccaatttttctgaaagctattctattgaaaccttgacg
gatattcttataaatgaaaacctgtatgacctggcattcaccattgtactcaaattttgg
aaggattcaggaatgaaaagagaattggagcgtgtctttgcagccattgcacagcagtgc
tgcccaaataaagtaggcaattctgggagagatttgaccggcagtcaacagctgctgctg
ctgccttcttcccaggatgacgcatgggatgacaataataagagtattgctgtggcccat
caagttcggggaagttgccagtgggaaacccttgaaatatatttggataaatataccgat
ctgcatccgaggctgcctgtcattgttgccgaaacacttctttacactgatcctgagatt
gagctacctctttggctggttcagatgttcaagacttccaagggcggaaacaggatgatt
tcgtggggcatgtctggcaaagaggcagatccagctgcattatttcgactatatataaat
tatgggcggcacacagaagcaaccaacttgttagtgcagtacttggattcgtttgcatca
tcgagaccggtggatgtgctccaccgcaaaaaaatgtctgctgcctggttcccgtacacc
acaatcgagagattttggtcccagcttgaagagatgcaaagtgctggccatagtgttgat
cagtgcgacaagctcaagaagttgctacatggagctctgatgaaccacctgcaacaagtt
gtcgttgactctgaagatgtgctgtcatctgttgggggaggtcaaggaacggagagccaa
agcagctga
DBGET
integrated database retrieval system
