Brachypodium distachyon (stiff brome): 100830765
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Entry
100830765 CDS
T01717
Name
(RefSeq) formin-like protein 5
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100830765
09122 Translation
03013 Nucleocytoplasmic transport
100830765
03015 mRNA surveillance pathway
100830765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100830765
03041 Spliceosome [BR:
bdi03041
]
100830765
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100830765
Spliceosome [BR:
bdi03041
]
Complex C
Other components
EJC/TREX
100830765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Glyco_hydro_59
Motif
Other DBs
NCBI-GeneID:
100830765
NCBI-ProteinID:
XP_003557810
UniProt:
C3SA89
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All DBs
Position
1:60589656..60594096
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AA seq
713 aa
AA seq
DB search
MSSFPVLKNRPIDQWKVTELKDELRKRKLPVKGLKEELVRRLFDSIQSEAEDEATEDVGA
DAAMDKATEVVGAHAQVDEAAKDVGVNEPVNLASERHTISQTTTTISVTEVREETVVHGT
QEITVPLREVTQEASLEEAHEHPSTEAPTVQEGHPNAESNAVLGAEKTPEIVTNETIVVD
DMTSADFKSDLTSSEVKSDAAEDMVPAPVDAQVSNADPMDTDIAAASMNDDGEKLVSKND
FGNNISIYDEECKNSELVNEDCEPVISKSNNQVPEISPDLGSPVKCESISSDDISNNKKN
IKDNLNANNFDLELEVKPEMVKPSSGITSLGGDLEQLGDDKELVKNQLSLEDMDTTANVE
EVGSPEKLNLDRSSGDESMEEDVMEIKQVDSNIKSDDLRGKTENVKEVALPDPVVEGSSV
DTNEVKAEEKLAASTEKRKLQAEETVVSTEPIKRQRRWTADSGKVPERQPLNQSDSDAPK
EIFQPALKRSFGRSDSTASGDSPKERIVPPSQKPATTSLRIDRFVRPFTLRAVQELLSKT
GSVCSFWMDHIKTHCYVTFSSVEEATATRNAVYNLQWPPNNGNHLLAEFVDPQEVKLKLE
PPPPAAAAVAAPISPATTPKAPPFQQAQANQSVPRQATTPREQLPPPPPLMKPPTSDPAS
ARDKLPPTPKKPEPPVVTLDDLFRKTQSSPRIYYLPLSDEEVSAKLAAQGKAK
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcatttcctgtgctaaagaaccgacctatcgatcagtggaaagttactgagttg
aaggatgaactccgaaagaggaagctccctgttaaaggtctgaaagaagaactggtgagg
cgtctgtttgactctattcagagtgaagcagaggacgaagccactgaagatgttggagca
gatgcagcaatggataaagccactgaagttgtgggagcgcatgcacaagttgatgaagct
gctaaagatgtgggagtgaatgaaccagttaatctggcttctgaaagacacaccattagt
cagacaacaactacaatttctgtgacagaagttagagaggaaacggtggttcatggaact
caggaaattacagttcctcttagagaggttactcaggaggcctctctggaagaggcccat
gaacatccctcaactgaagccccaacagtgcaagaagggcacccaaatgctgaaagtaat
gcagttctcggtgctgagaagactccagagattgtcaccaatgagacaattgttgttgat
gacatgaccagtgctgatttcaagtcagacctgacctcttctgaagtcaagtcagatgct
gctgaagacatggtgccagcacctgtggatgcccaagtatcaaatgctgatcctatggat
actgacattgcagctgcatcaatgaacgatgatggggagaagctggtttctaagaatgat
tttggcaacaatatttcaatctatgatgaagagtgcaaaaattctgagctcgtgaatgag
gattgcgagcctgtcatatcaaaatcaaacaatcaggtacccgagattagcccagattta
gggtctccagttaagtgtgagtcaatttctagcgatgatatatcaaataacaaaaagaat
ataaaggataacttaaatgctaataattttgatttagaactagaggttaagccagagatg
gtcaaaccatcatccggcattacttccttaggtggagatttggagcaattgggtgatgac
aaagagctggtcaagaaccagttgtctttggaagacatggataccactgctaatgtggaa
gaagttggttctccagaaaaactaaatttagacaggagttcaggtgatgagtcaatggag
gaggatgttatggagattaagcaagttgactccaatattaaatctgatgatctcagagga
aagactgagaatgtgaaagaggtggctctacctgatcctgttgttgagggttcatctgtt
gatacaaatgaagttaaagctgaggaaaagctagcagcttcaactgaaaagaggaaactt
caagctgaagaaacagttgttagcaccgagccaatcaaacgtcaacgtcgatggactgca
gacagtggcaaagtcccagagagacaaccattgaatcaaagtgattctgatgctcctaag
gaaatatttcagcctgcattaaaacgttcttttggcaggtctgattcaacagcaagtgga
gattctccgaaggagcggattgtgccaccatcacagaaacctgcaacaacttccttgaga
atcgaccgatttgtacgcccctttaccctgagagctgtgcaagagcttcttagtaaaact
ggatctgtttgtagcttctggatggatcatatcaagacccactgctatgttacattctcc
tcggtggaggaagctactgctactcgcaatgctgtctacaacctgcagtggcccccgaac
aatggcaatcatttgttagctgaatttgttgatccccaggaagtgaagctcaagcttgaa
ccccctcccccagcagcagctgcggtggcagctcctattagcccagccactacgccaaag
gcgcctccatttcaacaagctcaggctaatcaaagtgtgcctcgccaagctacaacacca
agagagcaattgccgcctccaccaccccttatgaagcctcctacatctgacccggcatca
gcaagggacaagctcccgcccaccccaaagaagccagagcctcctgttgtgacacttgat
gatctcttcaggaagacccaatcctctccaaggatttactatctgcctttatcagacgag
gaggtatcagctaagcttgctgcacagggcaaagcaaaatag
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