Brachypodium distachyon (stiff brome): 100830878
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Entry
100830878 CDS
T01717
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase 2 isoform X2
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100830878
Enzymes [BR:
bdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
100830878
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
100830878
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Motif
Other DBs
NCBI-GeneID:
100830878
NCBI-ProteinID:
XP_010238433
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Position
4:complement(41552158..41559320)
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AA seq
600 aa
AA seq
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MVKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSGDVIMAEGYEAFI
SCNRTLRGRGAYSGVATFCRGSAEGSAIIGDFVLEMPVEEEGLGVITREELLRVDNEGRC
IITDHGHFVLFNIYGPAVGEDDEERVRFKLLFYKILQKRWDFLLALGKRVFVVGDMNIAP
GSIDRCDAPPGFEKQMFREWLRSMLRENGGPFFDAFRSKHPERVGAYTCFNQKVGAEEYN
YGSRIDHILISGACFHHCNSMEDHSVFHCHVEDCEIMNHFRRGDSENISKWKGGRSIKLE
GSDHIPVYIILNGIPEVPVHNTPSTAARYLPEIRGRQQTIVSFLLKGKNYELEDATGSNM
SKDRIDESSCSDDLENKSISKEELPTAITEFSKGGNLPSLTCKRRNLDHWVNEGSSGNSN
NNNPTLLAPQSQKASFSGNKFTSNKKNKHNLSSQPTIKSFFRQPETKTGDADINNPVSSV
DTVPDMDELRSPKDDSLLEHIHCTAAADEDQDNSDIPCSQSTDKCNVATLEWQRIQLRMK
TTLPLCKGHREPCIPRSVKKGSNIGRLFYVCARAQGPSSNPEANCGHFQWASVKSKGQRQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagatagtgacgtacaacgtgaatgggctgcggccgcgtgtggcgcagcatgga
tcgctccgccgtctcctcgacgcgctcgacgccgacatcatctgcttccaggagacgaaa
ttgtcgaggcaggacttgtctggggatgtcataatggctgagggatacgaagcttttatt
tcgtgcaatcgtactttgagagggcgtggagcatactctggtgttgcgacattttgccgg
ggctctgcagaagggagtgcaataattggggattttgttcttgaaatgcctgttgaagag
gaaggtcttggcgtaataacaagagaggagctactcagggtggacaatgagggacgatgt
atcatcactgatcatggacattttgttctttttaatatatatggcccagctgttggagaa
gatgacgaagaacgagttcgttttaagctactattttacaagatattgcagaaacgatgg
gactttctgttggctcttgggaagagagttttcgttgttggagatatgaatattgctcct
ggttctatagataggtgtgacgcccctcctggattcgagaagcaaatgtttcgggaatgg
ctgagatccatgctaagagaaaatggaggccccttttttgacgctttcagatcaaaacac
cctgaaagggtgggagcttatacttgctttaatcagaaagttggagctgaagaatataat
tatggttctagaatagatcacattctcatttccggggcatgtttccatcattgcaattct
atggaagaccatagtgttttccactgccatgtggaggattgtgagataatgaatcatttc
cgaagaggggattcagaaaatatctcaaagtggaaaggagggagaagtattaagctagaa
gggtctgatcatattccagtttatattatactgaacggaatacctgaagttccagtccat
aataccccatcaacagctgcaagatatctcccagaaatccgtggacggcagcagactata
gtatcattcctcttgaaagggaaaaattatgaacttgaagatgccacaggttcaaatatg
tccaaggatagaatagatgaaagcagctgcagtgatgacctggaaaacaaaagtatatcc
aaggaagaattgccaactgctataactgagttttctaaaggtggtaaccttcctagtctg
acatgtaagcggaggaatcttgatcattgggtaaatgaaggttcaagtggcaactccaat
aataacaatccaacattactggcaccacaaagtcagaaagcttccttttctggcaacaag
ttcacgtcaaacaagaagaacaaacataacttatcctcccaaccaacgatcaagtcattt
tttcgacaaccagagacaaagacaggggatgccgatatcaataacccagttagttcagta
gacacagtacctgatatggatgaattacgttcaccaaaagatgatagtctgctggaacac
atccattgtacagctgcagctgatgaagatcaggataactcagatataccatgttcacaa
tcaactgataagtgtaatgtcgcaacattggagtggcaaagaatacaactgagaatgaag
acaaccctaccactttgcaaaggacaccgtgaaccttgcattccaaggtctgtgaagaag
ggctccaatatcggtcgcctattctatgtctgtgcccgtgctcagggaccttcatcaaat
ccagaagctaactgtggtcactttcaatgggcctctgtaaaatctaaaggacagcgccaa
tga
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