Brachypodium distachyon (stiff brome): 100831369
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Entry
100831369 CDS
T01717
Name
(RefSeq) histone deacetylase 15 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bdi01009
]
100831369
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100831369
04131 Membrane trafficking [BR:
bdi04131
]
100831369
03036 Chromosome and associated proteins [BR:
bdi03036
]
100831369
Enzymes [BR:
bdi01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100831369
Protein phosphatases and associated proteins [BR:
bdi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100831369
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
100831369
Membrane trafficking [BR:
bdi04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
100831369
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
100831369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
100831369
NCBI-ProteinID:
XP_003557557
UniProt:
I1H3H9
LinkDB
All DBs
Position
1:55566608..55577981
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AA seq
619 aa
AA seq
DB search
MASDMRPPNSKKGGVPSHARVSDQACHDKFQSCDGDGKPSRAAVNGVSVKENHGTCSSNP
DHAGAVLVDGAKGSIAQSGHVDSADYDCAGCLHGENGSPMACDLQQESDRDQAGHTLDDL
FFFDDEEEDDIDWEPSARIVENRWFCTNCTMPNMDEVTHCQNCNDHKGSEVLAGYDVFQA
SFAQAALISADTALPPGSTAIGFDEQMLLHSEVEIKPNPHPERPNRLRAIAASLAAAGIF
PSKCALVPPREITKKELLMVHTSDHVESVEQTKNMLYSYFTSDTYANKESARAAKLAAGL
CADLASLIVSGRVNNGFALVRPPGHHAGVKQAMGFCLHNNAAVAALAAQKAGAKKVLIVD
WDVHHGNGTQEIFEGNKSVLYISLHRHEDGNFYPGTGAAHEVGVLDGQGFSVNIPWSCGG
VGDDDYIFAFQHVVLPIAAEFAPDITIVSAGFDAARGDPLGCCDVTPAGYSQMTSMLTTC
SEGRLLIILEGGYNLRSISSSATEVVKVLLGDGPCYGKGAAAPSKEGMQTVLQVLEIQQQ
YWPVLVPILASLQAQQGLALSKYVNGGSKLKRRMLSGGPRPVWWKWGSKRLLYEVLFEGR
GPRKIKLRGNWKSTDETES
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgatatgagaccacctaacagcaaaaagggtggggtaccttcccatgctcgt
gtatctgaccaagcttgccatgacaaatttcaaagctgcgatggtgatggaaaaccatct
cgtgctgcagtgaatggtgtttccgtgaaagaaaaccatggaacgtgcagttctaatcct
gatcatgctggtgctgttttggtagatggagccaaaggttctatagcacaatcggggcat
gttgacagtgcagactatgattgtgctggttgtcttcatggagaaaatggaagtcccatg
gcttgcgatttacagcaagagtctgacagagaccaagctggacatacccttgatgatctg
tttttctttgacgatgaagaggaggatgatattgactgggagccttctgctcgcatagtt
gagaacagatggttttgcacgaactgtacaatgcccaacatggatgaggttacacattgc
cagaattgcaatgatcataagggatctgaggtattagctggatatgatgtattccaagct
agttttgcacaggcagctttgatatctgctgacacagcattgccaccaggttctacagca
attggttttgatgaacagatgttgctccacagtgaggtagaaattaaaccaaacccacat
ccagaaagacccaaccgccttcgtgcaatcgcggctagtcttgctgctgcaggaatattt
ccctcaaaatgtgctttggtacctcctcgagaaatcacaaagaaggaactcctaatggtc
catacttcagatcatgttgaaagtgtcgagcagacaaagaacatgctttacagctacttc
acttcggatacttacgcaaacaaagagtcagcacgtgccgccaaacttgcagcaggcttg
tgtgctgatcttgccagtttgatagtgtctgggcgtgtcaacaatggctttgcactggtg
agacctcctgggcatcatgcaggggtgaagcaagccatgggcttctgtcttcacaacaat
gcagcagtggctgcgttagcagcacaaaaagcaggtgccaagaaagtcttaatagttgac
tgggatgtgcaccatggcaatggcacacaagagatatttgaagggaataaatcagtcttg
tatatatcattacatcgccatgaggatggaaacttctaccctggaactggagcagcacat
gaggtgggagttctggatggtcaaggtttctcggtcaatataccttggagctgtggtggt
gttggagatgacgactatatctttgcttttcagcacgtggtgcttccaatagctgcagaa
tttgccccagacatcacaattgtatctgcgggatttgatgcagcaaggggtgatcctctg
ggttgttgtgatgttactcctgctgggtactctcagatgacatccatgttaactacttgc
tcagaaggaagattgttgattatactcgagggagggtacaatctaaggtctatatcctca
tcggctactgaagttgttaaggtcctacttggtgatggtccatgttacggtaaaggagca
gctgcaccatcaaaggagggcatgcagactgttttacaagtcctggagatccagcaacaa
tattggccagttttggttccaatattagcatcacttcaggcacagcaggggctggctttg
tccaaatacgttaacgggggaagcaagctgaagagaaggatgctttcaggaggaccaagg
ccagtctggtggaaatggggaagcaagaggcttctctacgaagtactgttcgagggtcgt
ggtccaagaaagatcaaactgagaggaaactggaaatcgactgacgaaacagaatcctag
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