Brachypodium distachyon (stiff brome): 100831375
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Entry
100831375 CDS
T01717
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100831375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100831375
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100831375
Spliceosome [BR:
bdi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100831375
Complex B
100831375
Complex C
U2 SnRNP specific factors
100831375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-GeneID:
100831375
NCBI-ProteinID:
XP_003558073
UniProt:
I1H669
LinkDB
All DBs
Position
1:complement(63814479..63818690)
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AA seq
767 aa
AA seq
DB search
MSKRTRLEGFSIPRPTSYSFERSQPAPRLYVPAEDDLDDIAFSDDAAAPSDAAEGGKAED
EEIDPLDAFMAEIQEEIRAPPPPPKPEALRLGDSDEDDDPMESFLRAKKDAGLALAADVM
NAGYNSDEEVYAAAKAVDAGMMEYDSDDNPIVVDKRKIEPIPPLDHSTIEYESFNKDFYE
EKPSISGMNAEEVADYMKSLAIRVSGFDVPRPVKNFADCGFPVPLMNAIAKQGYEKPTTI
QCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVICAPTRELA
HQIYLEAKKFAKPYNLQVAAVYGGVSKFDQFKELKAGCEIVVATPGRLIDLLKMKALKMF
RATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILSDPIRV
TVGQVGSANEDIKQVVNVLPSDAEKMPWLIEKMPGMIDDGDVLVFAAKKARVDEIENQLN
QRGFKVAALHGDKDQASRMETLQNFKSGTYHVLVATDVAARGLDIKSIKTVVNFDIAKEM
DMHIHRIGRTGRAGDKDGTAYTLITQKETRFAGELVHSLIAAGQDVPNELMDLAMKDGRF
RANRDSRKGGKKGGKGKGGGGGGGSSGGGGGGARGRGRGIRGVDFGLGIGYSTESGPQVP
APRSATVNALKTGMMQNFKSSFVSAASSMPSNSAPLRAAQFVRPALRGFVSGGTIGGDAG
AARPAPPAPSFVSTSRPAGNTNENTNTTPESSRDQRRERKRPSGWDR
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgaacgaggcttgagggcttcagcatcccgcgccccacgtcctacagcttc
gagcgctcccagcccgccccgcgtctctacgtccccgctgaggatgacctcgacgacatc
gccttctccgacgacgccgccgccccctcggatgccgcggagggaggcaaggcggaggat
gaagagatcgacccgcttgacgccttcatggcggagatccaggaggagattcgcgccccg
cccccgccgcccaagcccgaggccctccgcctcggggactctgacgaggatgacgaccca
atggagagcttcctgagggccaagaaggatgccgggctcgcgcttgccgccgacgttatg
aacgccgggtataattccgacgaggaggtatacgctgccgccaaggccgtggacgccggc
atgatggagtatgactcggacgacaaccccatagttgtggacaagaggaagatagaaccc
atacctcccctggaccattcgactatcgaatacgagtcgttcaacaaggatttctacgag
gagaagccgtccatttcagggatgaatgctgaagaggtggctgattatatgaaaagtttg
gcaattcgggtttcaggctttgatgtgccaaggccagttaaaaactttgcggattgtggg
tttcctgttccgttaatgaatgctattgccaagcagggctatgaaaaaccgacaacaatt
cagtgccaggctttacctatcgtactttcagggagagatatcattggtattgcgaaaacc
ggttcaggcaaaactgcagcatttgtgctccctatgattgttcacattatggatcagcct
gagcttgagaaagaagaaggtccaataggagtgatatgtgctccgacaagagaattagca
catcagatatacctcgaagctaagaagtttgctaagccttacaaccttcaagttgctgct
gtatatggtggtgtttccaaatttgatcagtttaaagaactgaaagcaggctgtgaaata
gttgttgctaccccagggagactaatagacttgcttaagatgaaggcattgaagatgttt
agggcaacttatctagttcttgatgaagctgatcgcatgtttgatcttggttttgagcca
cagatacgatccatcgtaggtcaaattagaccagaccgacaaaccttgcttttctctgca
acgatgccatacaaagtggaacgcttggctagagaaattttgagcgaccctattagagtt
acagttggtcaagttggcagtgctaatgaagacatcaaacaagttgtgaatgtactccct
tccgatgctgagaagatgccatggcttatcgagaaaatgcccgggatgattgatgatgga
gacgttcttgtgtttgcagctaagaaggctagagtcgatgagattgagaaccagttgaat
cagagaggattcaaagttgcagcacttcatggtgacaaggatcaggcatctcgcatggag
acactacagaatttcaaatctgggacttaccatgttcttgttgcaactgatgttgccgca
cgtggtctggacataaagtcaattaaaacagttgtgaactttgacattgcaaaagaaatg
gatatgcatattcatcgcattggaagaactggccgcgctggtgataaagatggcactgca
tatactctgattacgcagaaagaaacccgatttgcaggtgaactggttcatagtttgatt
gctgctggtcaagatgtgcccaatgaacttatggatctggcaatgaaggatgggagattc
agagcaaaccgtgactctagaaaaggtgggaagaaaggtggcaaaggtaaaggtggtgga
ggcggcggtggcagcagcggtggtggtggtgggggtgcacgtggacgcgggcgtggcata
cgtggagttgatttcggccttggcataggctacagtactgaatcggggccacaagtacct
gctccaaggtcggcaactgtaaacgcgttgaagacaggaatgatgcaaaattttaagagt
agctttgtctcagcggcttcgagtatgccgagcaacagtgcgcctttgagggctgctcag
tttgtaagaccggcacttcgtggttttgtctctggtggcaccataggaggagatgcaggc
gcagcacggccagcaccaccggcaccctcctttgtctccacatccagacctgcaggaaac
actaatgaaaatacgaacacaacccctgaaagctcgagggatcaacggagagagagaaag
cgaccatccggttgggatcgctag
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