Brachypodium distachyon (stiff brome): 100831378
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Entry
100831378 CDS
T01717
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi00040
Pentose and glucuronate interconversions
bdi01100
Metabolic pathways
Module
bdi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
100831378
Enzymes [BR:
bdi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
100831378
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Beta_helix
Motif
Other DBs
NCBI-GeneID:
100831378
NCBI-ProteinID:
XP_003558488
UniProt:
A0A0Q3JZE8
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Position
1:complement(68445320..68447836)
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AA seq
435 aa
AA seq
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MGPLQRMGPRKLLLASITTVSIFLHMFPHAHSETDAFPPEAADGPYASGPELSPGPALSV
FDVDDYGASAGNDATEAFLRAWKEACNSSSDPSLFLVPGGKTYRLMPVSFTGPCRATTIT
AMIKGTLEAPSNRSVWLDRPSDLSERWIAFEDVDHLHVMGGGTINGNGHEWWINSCKVNK
TMPCVRGPTALYFQSCEHLVVEDLQVRDSMQMHVVIAYSWKVLVSRLFVTAPGWSPNTDG
IHVSNSRDVLISSCIISTGDDCISIVSGSAFVRATGIFCGPGHGISIGSLGANKSWAHVS
DVLVEKATLVGTTNGVRIKTWQGGQGFAERITFQDIKMYNVTNPIIIDQNYCDSKTPCSE
QESAVAIRNIRYSSIHGTSASKVAVNFICSKAVHCDGIVMQDVSLAGTGSYLTCSSLNAR
VMELGLISPYCRSDM
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgggtcctctccagcgtatgggtcccaggaagcttctcctggcgtccattacgaccgta
tcgatcttccttcacatgtttccccacgcccattcagagacagacgccttccctcccgaa
gctgcagacggtccatacgcgagcgggccggagctcagcccggggccggcactgagtgtc
ttcgacgtcgacgactacggagcatcagccggcaacgacgccaccgaggcgtttctcagg
gcatggaaagaggcctgcaactcctcgtctgacccttccttgttcctcgtacccggcggg
aagacctaccgcctgatgcccgtgagcttcaccgggccctgcagagctaccacgatcaca
gcaatgatcaaggggacactggaggctccgtcgaaccgctcggtttggcttgaccggccc
agcgatctatcggagcgatggatcgcgttcgaggacgtcgatcacctccatgtcatgggc
ggcgggacgatcaacgggaacggacacgagtggtggatcaactcctgcaaggtcaacaaa
acaatgccatgcgtcagaggcccgacggcgctgtacttccagagctgcgagcatctggtt
gtggaggacctccaggtgagagacagcatgcagatgcacgtcgtgatcgcctactcctgg
aaagtgctcgtgtcgaggctgttcgtcaccgcgccaggatggagccccaacaccgacggg
atccacgtatccaacagcagagacgtcctgataagcagctgcatcatcagcacaggtgat
gactgcatatccatcgtgtctggctctgcgttcgtgcgggcaacgggcatattttgtgga
ccgggtcatggaataagcattggtagtctaggagcgaacaaatcttgggcccatgtctcg
gacgtgctggtggagaaggccacgctggtgggcacaaccaacggtgtgcggatcaaaact
tggcagggagggcaagggtttgcagaaaggattactttccaggatataaagatgtacaat
gtcaccaatcctataatcatcgaccagaattactgtgactccaagacaccatgttccgaa
caggaatcagctgttgcaatacgtaacatacgctacagtagcatacacggaaccagtgct
tcaaaggttgccgtcaattttatttgcagtaaggctgtgcattgcgacggcattgtgatg
caagacgtttctttggctggcacggggtcctaccttacatgttcttccctgaatgccaga
gtcatggaactaggattaatatccccttattgcagatcggacatgtag
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