Brachypodium distachyon (stiff brome): 100831563
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Entry
100831563 CDS
T01717
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100831563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100831563
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
100831563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
100831563
NCBI-ProteinID:
XP_010235775
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All DBs
Position
3:51292882..51299509
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AA seq
1415 aa
AA seq
DB search
MPPAADFPASKRKSRIEIPDSDDDADRRRESRSSVGTGGQRERSAEAGRSGGLERRLAAA
IARRRTRAAAASRPEVVNLTGDDDDDIRDEEAAGRREVLGRVKEEPLDDRGLDPEASVAR
RGRGRGRARAAAASAPVASRKRRREDDSGSRGRGGRRATRSAKQCTRGRRGGLRSLPSRP
SSSDEPLGDSGRAKRVRRGHAEGGGSGRHGAAPSKQAGSLVASSSRSRKGKQRAALPPKH
QFPLVSQSESSSESDDDDDDEEGDDGLDDVCSETSDESWQPRYNSEFQVAMKGEKKVEGR
RNSVEEEATEKELGENGNGIPVLEEAAEKELRENGNSIPVQEEAAEKELGENGNSIPVLE
EAAEKELRENGKSIPVEEEAAEKELGENGNSIQDDRYDGEDEEATDDAHAAEEEEEEEEE
EEEEEEEEEEEEEEEEEEEEEEEEEEEEQDDESDEAGEELHPVPNSNADAGGNARSGGEG
TPIGKRVFEGLCLVDNADNAVTTKSIRQRTRSNFKDRACLDKKLLGQGTCSKPYCIDTES
EEDVPPPPQPQPSSAECEDDGSGGDDRMPAKRRRGKEQITDSDDTQNDSEDSDENRTLAR
NARKGSSSRRPKNGASYQQNVKEGSRNYDSPSNPRHVKNYAANAGNPTDRFNMQSGDICF
NTNTLLPQRMKHGRVWTKQDTDNLLNSLLDEIENGSAPAQAQNEDRLPLVFSFGDEDQVE
EQSDHNKLQDELWAEMDFCMESTNVCPQSCEEGEKSNNGQEKPGDKATLCSQGKHDLVTD
EQIGVWCRRCNFIQLEIRHVVADMGKVSTERELRADRQLDLSINNLLTSMGYEGTCKIVD
HKAGSVWDLIPGVKEGLFTYQAAAVEFMWKNLAGGTKIQDVKNNINSDDLRGCWISHAPG
TGKTRSTIAFLQSYRVLFPRSCVLIIAPKAMLATWQDEIGKWNAKVPIHVYSSCDINWGG
DETIKRIVDNDEDFAQRLSVNKFGPKVRKVLKVRSWCEGSSVLGMSYEMFSKLAKQNSND
ETMRKLLLEKTDLLILDEGHKPRNKKSIIWKVLAEVRTKKRIILSGTPFQNNFEELYNVL
CLLQGTCDADSKLLGKDEDKGFWTSMSVDNITDERVNEIRDKLKPFLHIYNGEFLQKSLP
GLRESVVILNPFPHQKKIIKMLEDSRTKSGTNGHLDFEYKISLASVHPSLITSTQKLPYQ
LTSVMDKPLLESLRLNPCEGVKTKFVFEIVRLCQPLKERVLVFSQYLQPLDLIMQQLRSE
FLWTKDKEILSMSGDDDAETRQKLMNDFNNMESEAKVMLASTKACGEGITLIGASRVVLL
DVVWNPSVGRQAIGRAFRIGQKKIVHTYNLIAEGTQEKSKYDRQAQKDHMSKLLFSNETQ
PAECSKSPEFIVSSDKILEKMTEDTNLKTMFANIL
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgccgccggccgccgattttccggcctccaagcgtaagtcgcgcatagaaatccccgac
agcgacgacgacgccgaccgccggcgggagtcccgctcgtcggttggcacgggcggtcaa
agagagaggagcgctgaggcggggcgttccggtggtttggagcgccgcctggcggcggcg
atcgctcgacgccgcacgagggcggcggctgcgtcccgccctgaggtcgtcaaccttacc
ggtgacgacgacgacgacatccgcgacgaggaagcagccgggcgccgcgaggtcctgggg
cgcgtcaaggaggagcccctcgacgaccggggccttgatcccgaggcttcggtcgcgcga
agaggtcgaggccgcggccgcgcgagggcggcggctgcgtccgcgcccgttgcctcgagg
aagcgcagacgggaggatgactccgggtcgcggggcaggggaggccgccgcgcgacgcgc
tccgccaagcagtgcactcgcgggcggcgtgggggtttgcggtcgttgccctcgcgtccc
tcatccagcgacgagcctctgggtgattctggcagggcgaagcgcgtgagacgcggccat
gccgagggcgggggctcgggtcggcatggcgcagccccgtcgaagcaggccggctcgctc
gttgcatcaagtagtcgttcgcggaaggggaagcaaagagcagcgctacctcccaagcat
cagtttcctttggtgtctcagtctgagtctagttctgagtccgatgatgatgacgacgat
gaagagggtgatgatgggttggatgatgtgtgttcggaaacttctgatgagagttggcaa
ccccgatataacagtgagtttcaggttgcgatgaagggcgagaagaaggtggagggcaga
cgcaactccgtcgaggaagaggcaacggagaaggaactgggggagaacgggaacggcatt
cctgtcctggaagaggcagcggagaaggaactgagggagaacgggaacagcattcctgtc
caggaagaggcagcggagaaggaactgggggagaacgggaacagcattcctgtcctggaa
gaggcagcggagaaggaactgagggagaacgggaaaagcattcctgtggaggaagaggca
gcggagaaggaactgggggagaacgggaacagcattcaagacgaccgctatgacggtgaa
gacgaagaagcgactgatgacgcacacgcagcagaagaggaggaagaagaagaggaggag
gaggaggaggaggaggaggaggaggaggaggaggaagaagaagaagaagaagaagaggag
gaggaggaagaagaagaagaagaacaggatgatgaatctgacgaggcaggggaagaactg
catccggtgcctaacagcaatgccgatgctggtgggaatgccaggtcaggtggcgagggc
acgccgatcggcaagagggtttttgaaggcttatgtttggtggacaatgcagacaacgct
gttaccaccaaaagtatcaggcagcgcacacggtcaaattttaaggaccgggcatgctta
gacaagaagctgctcggacaaggaacttgcagcaagccgtactgcatcgatacagagtcg
gaagaggacgtgccgcctccgccgcagccacagccgtccagtgcagagtgtgaagacgat
ggcagcggcggtgatgacagaatgccggcgaagaggagacggggcaaggaacagatcacc
gacagcgatgacactcagaatgatagcgaggactccgatgagaatagaacacttgcaagg
aatgccaggaagggatctagttcaaggaggccaaagaatggagcgtcctaccagcagaat
gtcaaggagggttccagaaattatgatagtccttctaacccacggcacgtcaagaattat
gctgcaaatgcagggaatcccacggatagattcaatatgcagagtggcgacatatgcttc
aacacaaatactttgcttcctcagaggatgaagcatggacgggtgtggacgaagcaagac
acagacaatctactcaactccttgcttgatgaaatagaaaacggctcagctcctgcacaa
gcacagaacgaagacaggttacctctggtgttctcattcggggatgaagatcaagttgaa
gaacaatcagaccataacaagcttcaggacgaactgtgggctgaaatggatttttgcatg
gagtccaccaatgtttgccctcaaagctgtgaggagggcgaaaagagcaataatgggcaa
gaaaaacctggggacaaagcaactttgtgcagtcaagggaagcatgacctcgttactgat
gagcaaattggagtttggtgcaggcgctgcaacttcatccaacttgaaatcagacacgta
gtggcagatatggggaaagtgtcgactgaaagggaactgagggcagatcgccagctagac
ttgagtatcaataatttgctaacatcaatggggtatgaaggaacatgcaaaattgttgat
cataaagctggctcggtctgggaccttattcctggggtcaaggaaggcttgttcacatac
caggcggcagccgttgaatttatgtggaagaatctggcagggggtactaagattcaagac
gtgaagaacaacatcaacagtgatgatctgagaggctgttggatttcccacgccccaggg
acggggaagacccgatcaacaatcgcatttcttcaatcttaccgcgtgcttttcccgcgg
tcttgtgtgctgatcatcgctcccaaggcgatgctggccacatggcaagatgagatcgga
aaatggaacgccaaggtacctattcacgtgtatagttcctgcgatatcaactggggtgga
gatgagactattaagagaatagttgataatgatgaagattttgcccagaggctgtccgta
aataaattcggcccgaaagttaggaaagtgctgaaggtgagatcctggtgcgagggcagt
tccgttctcggtatgagttacgagatgttctcgaagcttgccaaacaaaacagcaatgat
gaaacgatgcgaaagctgcttcttgaaaagaccgatttactgatccttgatgaaggacac
aagccaaggaacaagaaaagcattatctggaaggttcttgcagaagtccgtaccaaaaaa
cgaattattctatcagggactccgttccagaacaactttgaagagctgtataacgtcctg
tgccttctacaaggaacttgtgatgctgatagtaagcttctggggaaggatgaagacaag
ggtttctggacttctatgtcagtagacaacatcacagatgaaagggtcaatgagatccgg
gacaaattgaagccttttttgcacatctataacggtgaatttcttcagaaatccctcccg
ggattgagggaatctgttgtgattctgaacccttttcctcaccagaagaaaatcatcaaa
atgctggaggacagtcgcacgaaaagtggcacaaatggccatcttgatttcgaatacaag
atatcccttgcgtcggtgcacccgtccctcatcactagcacgcaaaaattgccataccaa
ttaacatctgttatggacaaacctttattggagagcttacggctgaatccatgtgaagga
gttaagacaaagtttgttttcgagattgtccgtctatgtcaacctctaaaagagcgggtg
cttgtgttcagccaatatcttcaaccattggacttgatcatgcaacagctgaggagtgag
ttcctttggactaaagacaaagagatcctgagtatgagcggagacgacgacgctgaaact
cgccaaaagttgatgaatgacttcaataacatggagagtgaggccaaggtcatgcttgca
tcgaccaaagcatgtggggaaggcataacccttattggagcatcacgagtggtgctcctt
gacgtcgtgtggaatccttctgtaggaaggcaggcaatcggccgggcatttagaataggc
caaaaaaagattgttcatacatacaatctaatcgcagaaggaacacaagagaagagcaaa
tatgacaggcaagctcaaaaggatcatatgtcgaaattgttgttttcaaatgagacgcaa
cctgcagagtgcagcaagtcaccagaatttattgtttccagtgacaagattttggaaaaa
atgactgaagatacaaatctgaaaacaatgttcgcgaatattctctaa
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