Brachypodium distachyon (stiff brome): 100831848
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Entry
100831848 CDS
T01717
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X2
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100831848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bdi03036
]
100831848
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
100831848
SWR1 complex
100831848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
DBINO
Motif
Other DBs
NCBI-GeneID:
100831848
NCBI-ProteinID:
XP_010231973
UniProt:
A0A0Q3GAX2
LinkDB
All DBs
Position
2:complement(42565356..42588185)
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AA seq
2054 aa
AA seq
DB search
MASKGPRSKLDHETRARRKKALEAPREPRKPKAHWDHVLGEMVWLAKEFESERKWKLSMA
KKIAQRANMGIVDQATKDEKKQKEGEHRLRKVALNISKDVKKFWTKIEKLVLYKNQLEVE
ERKKKALDKQLDFLLGQTERYSTMLAENLVDVPHLQTQENGPLQTNVPSQEEVAEPSQMN
QPSQEKVAEPLQTNQLSHEEVTEENTNEPMPDDLDKMETDDDYNSSLNEELEDDEHTIDE
DEAQITKAERNEELAALQAEADLSLDDILKLYTKTKAQAVSVSRESSPASKDTFINSDLK
NLIKDPSNQANGCNHESGGTSSDEGNYSEEFDDSYSYTEFVKKNHGKGNGSIPSVGEQED
KDYVATDEGKDDEATLSEEEELAKEDSPDPPDEIKLLQKESEIPLEELLARYQMDGYADD
VTTELENSPTHSNEDVNTDMSLDGRSADILKLNNDTLENHEISDMLETEHVSGDALQLEI
VSEPSLQGCSVKEDELIDAKVMADEETGDSVIDDAAAAARSAQPTGNTFSTTSVRTKFPF
LLKHSLREYQHIGLDWLVAMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLI
VVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKQKRQGWMKPNFFHVCITTYRLVIQDS
KAFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFL
MPHVFQSHQEFKDWFCNPISGMVEGQDKVNKEVIDRLHNVLRPFILRRLKRDVEKQLPQK
HEHVIYCRLFRRQRNLYEDFIANSETQATLTSGNYFGMISIIMQLRKVCNHPDLFEGRPI
ISSFDMAGINMQISSSVCMVLDKGPFSQADLSDMNLVFTQNEFKMTSWEVDEIAAAFSPG
IISRGSGAEFSYSNMGGKRSIGTNVFEEIQNALQEERMKEGKERAASIAWWNRIRCQKRP
VYGTNVREVLTIRHPICDVLEKKSNPLCHMDFSSSLADLVLSSVEHFNKMLGFIESFTFA
IPAARAATPICWCKKRKSPVLLEPAYRELCMNEFSPILSPIRPAIVRRQVYFPDRRLIQF
DCGKLQELAILLRRLKSEGHRALIFTQMTKMLDTLEEFINLYGYTYLRLDGSTQPEERQT
LMQRFNTNPKFFLFILSTRSGGVGVNLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE
VNIYRLISESTIEENILKKANQKRALDDLVIQRGSYNTEFFKKLDPMEFFSGHAPLNVKD
QQKDRSMPSVSSNETGLALSNADVEAAIRQAEDEADYMALKRLEQEEAADNQEFSEEAAG
RLEDDELVNEEEAKRDEHSSEDNKHQCSDVDKDKNVALPMNQLDEEKALTLAAGDGDMDM
LADVKQMAAAAAAAGQASSSFENQLRPIDRYAMRFLELWDPIIDNAAVNYQANVVEEEWE
LERIEKLKEDLEAEIDEDQEPLSYETWDVDFATTAYRQHVEALAKKQLLEEQEKQAREAA
KELEETNDIMRCHRKTSKKNKRKAGKFKSLKRGRLSSESEAMLDETSVDTMSIDDNAPSP
ELMSDESPHHYSNKRKKMTSGNEEVNSSSRSLKKFKKAPKSNCISESSSRKHLLEGKRLK
LKDKVNDSDPKLMSIKSDGRISTPCMPVKRVMVIKPERLKRKGLIWPRDCASDSWTTEED
AVLCGTVHEYGPVWELASEFLHSIPGGAFYRGRYRHPVHCCERFRELICKHVLCATDKSN
SEKEKAPSGTGKAILKVSEDQTRMLLNVISEIPNNELLLQKHFVAILSSVWRSKCDREPC
RVTSTCSSAPHQPVRLSENWSMTNCRPTSNLLKTALADTQAQCPRAVIPRNQESRRNYLE
LVLDFHTDQHVYDTDFPSVVNVSILEPEPVKRAVVLVDQSLLSGLSHRNDENRFRIPSEA
CFDGEGAHWASSAFHIYDAVHHKAGPKYVGKHKAASEPGRPPKSKIQRTTEPQEVPTARN
DYLRAPDQLLRSAAEFHITHSLSDLGINDSEFTYFEDLPLNTDTEFAPCQYEYDLASLPV
IEELDPLSDFTDIG
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaaaggtccccggtcgaagctagatcatgagacaagagctagacgcaagaag
gctcttgaagctccaagggagcctcggaagccaaaagctcactgggaccatgttcttggg
gaaatggtttggctggcaaaggagtttgagtctgagagaaaatggaagttgtccatggct
aaaaagattgctcaaagggccaacatgggtatagttgaccaagcaacaaaggatgagaaa
aaacagaaggagggggaacatcgcctgagaaaagtcgccctaaatatttctaaggacgtg
aagaagttctggaccaaaatagagaagttggttctctataagaatcaactagaagttgag
gaaaggaagaagaaggccctcgataagcagcttgatttccttttaggtcagactgaaaga
tattctacaatgttggctgaaaacctcgtggatgttccacatctgcaaacacaagaaaat
ggaccgctgcagacaaatgtaccatcccaggaggaagtagcagaaccttcgcagatgaat
caaccatcgcaggagaaagttgcagaacctctgcagacaaatcaactatcccatgaggaa
gtaaccgaagagaacacaaatgagccaatgcctgacgatctagataaaatggaaactgat
gatgattacaatagctccttgaacgaagaactggaagatgatgagcacacaattgatgag
gatgaagctcaaatcacgaaggctgagcgcaatgaagaattagctgctttgcaggcagaa
gctgatctatcactggatgatattctcaaattgtataccaaaactaaagctcaagcagtc
tcagttagcagggagagcagtccagctagcaaagatactttcattaactcagatttgaag
aatttgattaaagatccttcaaaccaagctaatggctgtaatcatgaatctggtggtact
tcaagtgatgaaggcaattattctgaggaatttgatgatagctactcttacactgagttt
gtgaagaagaatcatggcaaaggtaatggcagtatcccctctgttggtgagcaggaggac
aaagattatgttgctactgacgaaggaaaggatgatgaagcaactttatctgaagaggaa
gagctggcaaaggaagacagccctgatcctccggatgagataaagttactgcagaaagag
agcgagatcccactagaggaacttctagcgaggtaccaaatggatggctatgcagatgat
gtaactacagaattggagaattcacccactcattctaatgaagacgttaatactgacatg
tctttggatggtcgatctgcggacattttgaaactgaacaatgacacccttgaaaatcat
gaaatatcagacatgctggaaacagagcatgtgagcggtgatgccctacaactagagata
gtatcagagcctagcttacaaggatgttctgttaaagaagatgagctgattgatgctaag
gtgatggccgatgaggagactggtgacagtgtaattgatgatgctgctgctgctgcaaga
tcagcacaaccaactgggaacaccttctcaacaacaagcgtacggacgaaattcccattc
ctcctcaaacattctcttcgggaataccagcatattgggttggactggttggttgctatg
tatgaaaagaggctgaatggaattctagcagatgaaatgggtttaggaaagacgataatg
actatctccttgctggcacaccttgcatgtgagaaggggatatggggccctcatcttatt
gtcgtgccaaccagtgttatgttaaattgggagactgaatttctgaagtggtgtcctgcc
tttaaaatactgacatattttggaagtgcaaaggagagaaagcagaaacgtcagggttgg
atgaaaccaaattttttccatgtatgcatcacgacatacagacttgttattcaggactcc
aaagcgttcaagcgaaaaaagtggaagtatcttattcttgatgaggctcatctgataaag
aactggaaatcacaaagatggcagactctgctaaattttaattcgaaacgacgtatcctt
ttgactggaactcctttgcaaaatgaccttatggaactttggtctctcatgcattttttg
atgccccatgtattccagtctcaccaagagttcaaggattggttctgcaatccaatttca
ggaatggtggagggccaagacaaggtaaacaaggaagttatagatcggttgcacaatgtc
cttcgtccatttatactacgccgattgaaacgagatgttgagaaacagttaccacagaag
catgagcatgtcatttattgccgacttttcagaagacaaaggaacttatatgaagatttt
attgccaactcagagacacaagcaacactgacaagtgggaattattttggtatgattagt
atcattatgcaactcagaaaggtttgtaaccacccagatctttttgaaggccgtccaatt
atcagctcatttgacatggcaggaattaacatgcagatcagctcttctgtttgcatggtc
cttgataaggggccattttctcaggctgatctatctgatatgaaccttgtatttacccaa
aatgaatttaaaatgacttcttgggaggtggatgagattgctgctgccttttctcccggc
atcatttctaggggttctggtgcagagttctcctactctaacatgggtggtaagagaagt
atcgggacaaatgtttttgaagaaattcagaatgccttgcaggaggagagaatgaaagaa
ggcaaagaaagagcagcttcaattgcatggtggaataggataagatgccagaagaggcct
gtttatggcacaaatgttagagaggttctgaccataagacaccctatttgtgatgttctt
gagaagaagagcaatcctttgtgccacatggatttttcctcgagtcttgcagatcttgtt
ctttcatcagtggagcacttcaataaaatgcttggctttatcgaatcatttacttttgca
attcctgctgcacgggctgctactcctatttgctggtgcaaaaaaaggaagtctcctgtt
cttcttgaaccagcatacagagaactatgcatgaatgagttctctcccattctctctcct
atcaggcctgccattgtccgccgtcaagtgtactttcctgacaggcgcttgatccagttt
gactgtgggaagttgcaggagcttgctattttgctgagacgtttgaagtcagaaggacac
agggccttgatatttactcagatgactaagatgcttgatactttggaggagttcattaat
ttgtatgggtatacatatttgaggttagatggttctacccagccagaagagaggcagaca
ctaatgcagaggtttaatacaaacccaaagttttttcttttcattttatccactcgtagt
ggtggtgtgggagtcaacctagtaggcgcagacactgttatattctatgacagtgactgg
aaccctgcaatggatcaacaagcccaagacagatgtcacaggataggacaaactcgggaa
gttaacatctatagactaattagtgaaagcactatagaggagaatattctcaagaaagca
aatcagaagcgagctcttgatgatttagtgatacaacgtggtagttacaatacagaattc
ttcaagaaacttgaccctatggagtttttttctggccatgcacctcttaatgtcaaagat
cagcagaaggatcgctctatgccttctgtatcctcaaatgaaacaggtctggcactgtca
aacgcagatgttgaagcagctattaggcaggcagaagatgaagctgactatatggctctg
aaaaggttggagcaggaagaggctgctgacaatcaagaattcagtgaggaggctgctgga
agacttgaggacgatgagcttgtaaatgaggaagaagcgaaacgtgacgagcacagtagt
gaagacaataaacatcaatgttctgatgtggataaggacaaaaatgttgctttacctatg
aaccaattagatgaagagaaggctcttacattggctgcaggtgatggagatatggatatg
cttgctgatgtaaagcagatggctgctgcagctgcagcagcaggacaagcgagttcatct
ttcgaaaatcagctccggccaattgatagatatgcaatgcgttttttggagctctgggat
cctataattgacaatgctgctgtaaactatcaggcgaatgttgtagaggaagagtgggaa
cttgaacgcattgaaaaactcaaagaggatttagaagcagaaattgatgaagaccaggaa
ccactatcttatgagacatgggatgttgattttgctactacagcatatcgccaacatgtt
gaggctctagctaaaaagcagttgttggaagagcaggaaaaacaagctcgtgaagcagcc
aaagagttggaggaaacgaatgatataatgaggtgtcaccgcaaaacgtcaaagaagaac
aaaagaaaggcaggcaagtttaaatccttaaaaaggggacgtttgtcatctgagtcagag
gccatgcttgatgaaacgtctgtagatactatgagtattgatgacaatgcaccctctcca
gagcttatgagtgatgaatcaccacaccattattctaataaacgtaaaaagatgacgtct
ggaaatgaggaagtcaacagcagtagcagaagcctgaagaagtttaagaaagcccctaaa
tcaaattgtatttcagagtcctcatcgcgtaagcacttgcttgaaggcaagcggcttaag
ttgaaagacaaagttaatgattctgatcccaaattgatgagcattaagagtgatggccgc
atttccaccccctgcatgccagtaaaacgtgttatggtaattaagcctgagaggttgaag
aggaagggtcttatatggcctcgagattgtgcgtctgattcatggactactgaggaagat
gctgttctttgtggaactgtacatgagtacggtcctgtttgggaactggctagtgagttt
cttcattccataccaggtggtgcattttataggggaagatatcgtcatcctgtgcattgc
tgtgagagattccgagaattaatctgcaaacatgtattgtgtgcaactgacaagtcaaac
agtgagaaggagaaggctccttctggtactgggaaggctatcttgaaagtatctgaggat
caaactcggatgttgctgaatgtcatcagtgaaattccaaacaatgagctgcttctccag
aaacatttcgtggccatactttcctctgtttggagatccaaatgtgatcgtgaaccctgc
cgtgttacaagtacttgctctagtgcaccccatcagcctgttagattgagtgagaactgg
tccatgacaaactgcagaccaacctctaatctcctaaagacagcccttgcagatactcag
gcccaatgtccaagagcggtaataccgaggaaccaggaatcccgccggaactatttggaa
ttagtattggatttccatacagaccaacatgtttatgatacagactttccatctgtagtt
aatgtgtccattctagaaccagaacctgttaaacgtgctgttgtgctggtggaccaatca
ctgctgtctggactttctcatagaaatgatgagaacagattcaggataccatccgaagct
tgttttgatggggaaggagctcactgggcatcatctgctttccacatttatgatgctgtt
catcataaagctggcccaaagtacgtaggaaagcacaaagcagcttcagaaccaggaaga
cctccaaaatccaaaattcagaggactactgaaccgcaggaagtgccaactgctaggaat
gattatctccgggctccggatcaacttttgagaagtgcagctgagttccacattacgcac
tccctctctgaccttggcattaatgattctgaattcacctacttcgaagatcttcctcta
aatactgacactgagttcgctccttgccagtatgagtacgaccttgcttcccttcctgtt
atagaggagttggatcctctttcagatttcacagacattggatga
DBGET
integrated database retrieval system
