Brachypodium distachyon (stiff brome): 100831938
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Entry
100831938 CDS
T01717
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi00040
Pentose and glucuronate interconversions
bdi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
100831938
Enzymes [BR:
bdi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
100831938
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
CTXphi_pIII-N1
Motif
Other DBs
NCBI-GeneID:
100831938
NCBI-ProteinID:
XP_003566335
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Position
2:27118519..27120242
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AA seq
382 aa
AA seq
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MTILFLLFFFTTILSISSTSSSQINASNTTTLHRRLTLFGSCGTGNPVDDCWRSDPRWAD
NRRRLADCGIGFGRNAIGGKNGPTYVVTDPSDDDPSSPAPGTLRYGLTQDGPLWIVFAHD
MTIRPKHELVVGSHKTVDGRGAQVVVGEGGACFAVDGASNVIIHGVTIRGCRPKPRGPRG
RSESDGDGVSVCEARDVWIDRCSFEDCADGLVDVTRASTGVTVSNSLFTNHDKAMLLGHS
DSFDDDRAMRVTVTLNRFGPGLVQRMPRCRYGVFHVVNNDYVKWGMYAIGGSASPNILSL
GNRFSAGHNKEVTKREDDMAENDWRNWRWKSVGDLMLNGAFFTASGGPGPEVNAPSFAKS
ASMVEQMTAEAGALSCNRDSLC
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgacgattctcttcttactattcttcttcacaaccatcttatcaatctcttccacttcg
tcgtcacagatcaacgcctccaacacaacaacattacaccgacgcctaacgttgtttggg
agctgtggcacgggcaacccggtggacgactgctggcgcagcgaccctcgctgggccgac
aaccggcgccgcctcgcggactgcggcatcggcttcggccgcaacgcgatcggcggcaag
aacgggccgacatacgtcgtcacggaccccagcgacgacgatccgtcaagcccagctccc
ggcacgctccgctacgggctcacccaggatgggcctctgtggatcgtcttcgcgcacgac
atgacgatccggcccaagcatgagctcgtcgtgggctcccacaagaccgtggacggccgc
ggggcccaggtcgtcgtgggcgagggcggcgcgtgcttcgcggtggacggcgccagcaac
gtgatcatccacggcgtcacgatccgcggctgcaggcccaagcccaggggcccgcgtggc
aggtcggagtcggacggcgacggcgtgagcgtctgcgaggccagggacgtgtggatcgac
cgctgcagcttcgaggactgcgccgacgggctcgtcgacgtcaccagggcctccacgggg
gtcaccgtgtccaacagcctctttactaaccacgacaaggccatgctcctcggccacagc
gactccttcgacgacgacagggccatgagggtcactgtcacgctcaatcggtttggtcca
ggccttgtgcagagaatgccaaggtgtcggtatggggtgttccacgtcgtcaacaacgat
tacgtaaaatgggggatgtatgccatcggtggcagtgcgtcgccaaacatccttagcctg
ggcaaccgattcagtgctggccacaataaagaagtgaccaaacgcgaagacgatatggcg
gagaacgactggaggaattggaggtggaagtcggtaggggatttgatgctcaacggtgcc
ttcttcacggcatcgggcgggccggggcctgaggttaacgcacctagttttgcaaagtcc
gcctctatggtcgagcagatgacggccgaggcaggggctctctcctgcaacagggattct
ctctgctaa
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