Brachypodium distachyon (stiff brome): 100831991
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Entry
100831991 CDS
T01717
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100831991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100831991
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100831991
Spliceosome [BR:
bdi03041
]
Complex C
Other components
Step II factors
100831991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
AAA_22
HA2_C
DEAD
AAA_19
AAA_30
ABC_tran
SLFN-g3_helicase
AAA_16
ATPase_2
Flavi_DEAD
Helicase_RecD
nSTAND3
NPHP3_N
T2SSE
FtsK_SpoIIIE
AAA_29
Cas3-like_C_2
PhoH
NB-ARC
Dynamin_N
AAA_33
nSTAND1
Motif
Other DBs
NCBI-GeneID:
100831991
NCBI-ProteinID:
XP_003577604
UniProt:
I1ILX4
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All DBs
Position
4:complement(22902466..22913951)
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AA seq
706 aa
AA seq
DB search
MPSTSLPATPPVLPISEHEDEIVAAVEANPVVVVIGETGSGKSTQLSQILHRRGYTRRGT
IAITQPRRVAAVSVSRRVAQELGVSIGEEVGYAIRFEDRTSEKTLIKYLTDGVLLRESLS
NPELKQYSVIILDEAHERSLNTDILLGLMKRLIKDRASDLKVLITSATLDGLKVSKFFSG
CPVLNIPGTIFPVEKFYSTDRPTNYIESSLRTAIDIHVKEVPGDVLIFMTGKDDIDKMVS
KLEERIQNLEEGSCMDALVLPLHGSLPPEQQVRVFAPAPPECRRFIVATNVAETSLTVDG
VVFVIDCGYVKQRQYNPSTGMYSLDVVQISRVQADQRAGRAGRTRPGKCYRLYPSSIYQK
EFLEATIPEIQRTSLAGSVLYLKSLNLPDIDILMFDFLDPPSRESLEDALRQLYLIDAID
ENGQITDVGRLMAELPLDPSLSRTLIEANELGCLSQALTVAAVLSAEITLRQTRSKEIER
KRKRRELPDGSGWGDHIQLLQIFESWDQADYDPKWCSDHDLQARGMKFSKDVRNQLSQII
QKIAKGPTDLQARRGRKSDPDYRKLRKALCVGYGNQLAERMLHHNGYHTVGYRTQLVQVH
PSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCAVEQAWVKPILKKLEKLNIKKLSGGS
TAPTDSEPLGNKQVSSPTKATEIKQSDVDSKIQAARERYLARKGKK
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgacgtccctgccggcgacgccgccggtgctgccaatctcagagcacgaggac
gagatcgtggcggccgtggaggcaaaccctgtggtggtggtaattggcgagaccggttcc
ggaaagagtacccagctctcccagatcctccaccgtcgaggctacacccgccgcggcaca
attgctatcacccagccccgccgcgtcgcggccgtatccgtctccaggagggtggcacaa
gagctcggtgtctcaattggggaagaagttggttatgctattcgatttgaagaccgaact
tcagaaaaaactttgataaagtatctgacagatggtgttcttctgcgtgaaagcctttca
aatcctgagttgaagcaatactcagtgattatcttggatgaagctcatgaacgtagttta
aacactgatatccttttaggtttaatgaaaagattgataaaggatcgagcatcagatttg
aaagttctcatcacttctgcgactcttgatggtttgaaagtgtccaagttcttctcagga
tgtcctgtgttgaacatccctggaaccatattccctgtggagaagttctacagcacagat
cgcccaaccaattatattgaatcttctctcaggacagctatagatatccatgttaaggaa
gttcctggggatgtattaatatttatgacaggaaaggatgacattgataagatggtgtca
aaattggaggaaagaattcaaaatcttgaggaaggttcttgtatggatgctcttgtcctt
ccacttcatggttctttgcctcctgaacaacaggttcgggtatttgctccagcacctcca
gagtgtcgacggttcattgttgcaacaaatgtggctgaaacttcattgacagtggatggt
gttgtgttcgtgatcgattgtggttatgtaaagcaacgccagtataatccgtcaactgga
atgtattcccttgatgtagttcagattagcagagtgcaggctgaccagcgagctggacga
gctggaagaactaggcctggcaagtgttataggttatacccaagttccatctaccaaaag
gagtttcttgaggccacaattccagaaattcaacggacttcccttgctggaagtgttctg
tatctgaaatcattaaatcttcctgatatcgacattttgatgtttgatttccttgaccca
ccatcacgtgaatcgttagaagacgctttaaggcagttatacctcattgatgcaattgat
gaaaatgggcaaataacagatgttgggcgcctaatggcagagctccctcttgatccttcg
ctttcaaggactttgattgaagcgaacgaattaggatgcctatcgcaggcattaactgtt
gctgcagttttgtcagctgaaatcacactgcggcaaactagaagcaaggaaattgagaga
aagagaaaaaggcgagagcttcctgatggttctggctggggtgaccatatacagttgctt
caaatatttgaaagctgggatcaagcagactatgacccaaagtggtgctcagatcatgat
ttgcaggcgcgaggcatgaaattcagcaaagatgtaaggaatcaattaagtcagattatt
caaaaaatcgccaaaggtccaacagatctgcaagcaaggagaggacgtaagagtgaccct
gactacagaaaattgaggaaagctctttgtgtaggatatggtaaccagctagcggagaga
atgctgcatcacaacggttaccatacggttggatacaggacacaacttgtgcaggtgcat
ccgtcttctgtgctggaaggtgatgaatatgggaaattaccagtgtatgttgtctaccat
gagctgataaatactactcgccctttcatgagaaatgtttgtgcagttgagcaggcttgg
gttaaaccaatcttaaagaagcttgaaaaactgaacataaagaaattaagcggtggttca
actgcaccaacagattctgaacctctgggtaacaagcaagtaagctctccaacaaaagct
acggaaattaagcaatctgatgtggatagtaagattcaggctgctcgagagcgctacctc
gcacgaaaaggcaagaagtga
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