Brachypodium distachyon (stiff brome): 100832027
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Entry
100832027 CDS
T01717
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100832027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100832027
03009 Ribosome biogenesis [BR:
bdi03009
]
100832027
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100832027
Spliceosome [BR:
bdi03041
]
Complex A
U1 snRNP components
U1 related factors
100832027
Complex B
100832027
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
Pre-60S particles
Helicases
100832027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
100832027
NCBI-ProteinID:
XP_003564892
UniProt:
I1HUG3
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All DBs
Position
2:complement(56061133..56065304)
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AA seq
571 aa
AA seq
DB search
MNPYADNRYADPSSYRDRRSDLAAAPILAPPVPVAANPYAAYTPMPMPAPAGGDFSRFGQ
GGGRGYGGGMSYGGRGRGGFGGGPGGFRGGGRGGSNGRDGLDSLSLPKPDFRDLIPFEKS
FYVECPAVQAMSDMEVAQYRQLRDITVEGREVPKPIRYFQEANFPDYCMQAILKSGFVEP
TPIQSQGWPMALKGRDVIGIAETGSGKTLSYILPGLVHVGAQPRLEQGDGPIVLILAPTR
ELAVQIQEESTKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAGHT
NLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVESLARQFLQNP
YKVMIGTAELKANHSIQQIVEVISDHEKYPRLSKLLSDLMDGSRILIFFQTKKECDKVTR
QLRMDGWPALSIHGDKAQSERDYVLSEFKSGKSPIMAATDVAARGLDVKDIKCVINFDFP
TTIEDYIHRIGRTGRAGATGMAFTFFTHSNSKYSRNLVKILREAGQVVNPALEAMSKSAN
SMGGGSNFRSRGRGGFGNRSGSNSIPVRRRF
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaatccctacgcggacaaccgctacgccgacccttcctcctaccgcgacaggcgcagc
gacctggctgcggcccctatactcgccccgccggtccccgtggccgcgaacccctacgcc
gcctacacgcccatgcccatgcccgctcctgctggcggcgacttctcgcgttttgggcaa
ggcggcggcagagggtatggtggaggcatgtcctatgggggtagaggcagaggcggcttt
ggcggtggacccggtggcttccgaggcggtggcagaggaggcagcaacgggagggatggc
ctggactcgctctccctgcccaagccggacttcagggatcttataccgtttgagaagagc
ttctacgttgagtgcccggccgtgcaggctatgtcggacatggaagtggcgcagtaccgt
caactccgggatatcacagtcgagggcagggaggtccctaagcctatccgctacttccag
gaagccaactttccagattactgcatgcaagcaatactgaagtccggatttgtggagccc
actcctattcagtctcagggttggccaatggctttgaagggcagggacgtgataggaatt
gcggaaacaggctcagggaaaacactatcttacatactccctgggttggttcatgttggt
gcacagcctcgcctagaacaaggtgatggcccaattgtcttgatccttgctcccacaaga
gaacttgctgttcaaatccaggaagagtctacaaagttcggatcatactcaagaactaga
agcacatgtatctatggtggagcacctaagggaccacagatacgtgaccttaggagagga
gttgaaattgtcattgcaacaccgggtcggttgatcgatatgctggaagctggtcacact
aacttacgtagggttacataccttgtcttggatgaggcagaccgaatgctagatatgggt
tttgagcctcagattcggaagatagtggcacaaatccgtccagacaggcaaaccttgtac
tggagtgccacgtggccgagagaagttgaatccttggctagacaatttctgcaaaacccg
tacaaggtaatgattggaacagctgaacttaaagctaaccattccatacaacaaattgtc
gaagttatctcagatcatgaaaagtatcccaggctaagtaagcttttatctgatctaatg
gatgggagccgaatcttgatattttttcaaacaaaaaaggaatgtgataaggtcactcgg
caacttagaatggatggatggccagcattatctatacatggtgataaagctcagtctgaa
agggactatgttctgtcagagtttaagagtgggaagagtcctataatggctgccactgac
gtagcggcacgtggtcttgatgtgaaggatataaaatgtgtgattaattttgatttccca
acaactatcgaggattatattcacaggataggtcgtactggccgtgctggtgctactggg
atggcatttactttcttcacacactccaattcaaaatattcaaggaatcttgtgaagatc
ttgcgtgaagctggccaggttgtgaacccagcgcttgaagctatgtccaagtctgctaat
tctatgggaggaggaagcaatttccggtcaagggggcgaggtgggtttggtaaccgttct
ggatcaaattctatcccagtgcggagaagattctga
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