Brachypodium distachyon (stiff brome): 100832382
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Entry
100832382 CDS
T01717
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100832382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100832382
03012 Translation factors [BR:
bdi03012
]
100832382
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100832382
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100832382
Translation factors [BR:
bdi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
100832382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
ATPase
T2SSE
AAA_19
ABC_tran
AAA_23
NACHT
ATPase_2
AAA_16
Myosin_head
Motif
Other DBs
NCBI-GeneID:
100832382
NCBI-ProteinID:
XP_010229927
UniProt:
I1GNA7
LinkDB
All DBs
Position
1:6071848..6078648
Genome browser
AA seq
1150 aa
AA seq
DB search
MRRGLRRGLGIFLVPLPSPLSRPPPPPIPLAALFLLPRRPDAFSLRFFCSFGGGRAVEQF
SDDEYDNEYEDHRPSSSVANIDEWRWKLTMLQRNAEEQEIISRDRRDRRDYDQIANLVKR
MGLYSELYGKVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLPF
DKGGSKIERGSEKADNVNLDEKQDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGVKMV
EFRKSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNIIC
TQPRRISAMAVSERVSTERGENLGESVGYKVRLEGMKGKDTHLLFCTSGILLRRLLSDRN
LNGVSHVFVDEIHERGMNEDFLLIVLKDLLSRRQDLRLILMSATLNAELFSSYFGGAPTI
HIPGFTHPVRAHFLEDILERTGYKMTPSNQLDDYGQDKVWKTQRQLLPRKRKNQITTLVE
DALQNSNFETYGSRTRDSLANWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDISS
LKDQLKAHPLLGDPNRVLLLSCHGSMATAEQRLIFEKAPPNVRKVVLATNMAEASITIND
IVFVMDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDA
FAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPRAVQNAVEFLKKIGALDE
NENLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPVLTVVAGLSARDPFLLPQDKKDLAG
TAKSRFSAKDYSDHMALVRAYEGWKDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQFSYI
LKDAGLIDSDGSTNNSLSHNQSLVRGIICSGLFPGISSVVHRENSMSFKTMDDGQVLVYA
NSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGAVTKGSVAGHLKMLDG
YIDLFMDPSLSECYLQLKEELDKLVQQKLEDPAFDIHKEGKYILFAAQELAAGDLCEGRF
VFGRETSRARLQDNDDGKSNIVKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRAIV
EFKGMQFVGKPKRNKQIAERDAAIEALGWLTQTSGTKLQDEGDDSPLDLTDNMLKLLSRP
RRHMRNNSRK
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcggcttgcggcgtgggctgggcatcttcctcgtcccactccctagcccactc
agccggccgccgccgccgccgatccctctcgcggctctcttcctcctaccgcgccgcccc
gatgccttctcccttcgtttcttctgcagcttcggagggggccgcgctgtcgagcagttc
tccgacgacgagtacgacaacgagtacgaggaccaccggccgtcctcgtcggttgctaac
atcgatgagtggaggtggaagctgaccatgctgcagcgcaacgccgaggagcaggagatc
atctccagggaccggagggaccgccgggactatgaccagatagccaacctcgtcaagagg
atgggactctatagtgagctctatgggaaggttattgttgcgagcaaggtcccgctgccg
aactacaggccggacctggacgacaagcgtccacaaagagaggtggtgattccactaagc
ttgcagaggagggttgaaggacttgtgcaggagcaccttgaccgtgcgctattgccattt
gataaaggtggtagcaagattgaaaggggttctgagaaagctgataatgtgaacctagat
gagaaacaggattctctgctcgatcggtcagtcatggagaagatccttcagaggaagagt
attcggatgcgcaattttcaaagaagttggcaggaatcacctgaaggtgttaagatggta
gaattccggaaatcacttccagcatacaaggaaaaggaaaggcttcttgcagccattgca
cgtaatcaggttatagttatttctggagagacagggtgtggcaaaacaactcagttgcct
caatttgtattagagtcagagatagaatctggtcgaggggctttttgtaatataatctgt
acgcagccacgaagaatatctgcaatggctgtttcagaaagagtatccaccgaaagagga
gagaacctcggtgaatcggttggctacaaagttcgattggagggaatgaaaggaaaggac
acacatttacttttctgcaccagtggtattttactgagacggttgctgagtgaccgaaac
ttgaatggagtgtcccatgtatttgtggatgaaatacatgaaagaggcatgaatgaagat
tttttattgatcgttctaaaggacctattgtcacggcgccaagatttaagattgatattg
atgagtgctactctaaacgcggaacttttttcaagttatttcggaggagcgccaactatc
cacatccctggattcacacatccagttagggcacattttctggaagacatattagagagg
acaggctataagatgaccccaagtaatcaacttgatgattacggccaagataaagtctgg
aagactcagagacagctattgcctagaaaaaggaaaaatcaaatcactacacttgtcgag
gatgcccttcaaaattcaaattttgagacttatggctcgaggacacgcgattctctggca
aattggaaccctgattgcatagggtttaatctcattgaggctgttctgtgccacatatgt
cgtaaagagcgacctggtgcagttttagtttttatgaccggatgggatgacattagttct
ttgaaggatcaactaaaagcacatccattgctaggtgatccaaatagagttttactgctt
tcatgccatggttccatggctactgctgagcagaggctaatatttgagaaggcacctcct
aatgttcggaaggtagtacttgccactaacatggcagaagcgagtattacaatcaatgat
attgttttcgtcatggattgtggaaaagcaaaggaaaccacatatgatgctctgaacaac
actccttgcttactcccctcgtggatttcaaaggcttctgcccgtcagaggagggggaga
gctggtcgtgtccaacctggagaatgctaccatctctaccctagatgtgtgtatgatgca
tttgcagagtatcagcttccggagcttcttagaactcctttgaattcactatgtttgcag
ataaaaagtttgcaggttggcagcattggggagtttctgtcagctgctttgcagcctcca
gaaccacgagctgtccaaaatgcagtggaattcctgaagaagattggagcgttagatgaa
aatgagaatcttactgatctaggaagatacctttccatgctgccagttgatccgaagttg
gggaagatgcttataatgggtgcagtttttcgttgcattgaccctgtacttaccgtggtt
gctggattgagtgcccgggatcctttcctgttgccacaagacaagaaggatttggcagga
actgcaaaatcaagattttcagcgaaagattatagtgatcatatggcccttgttcgagct
tatgaaggatggaaggatgctgagagagaaggatctggttatgaatactgttggagaaat
ttcctttctgctcaaacactacaagccattcattctcttcgaaagcaattcagctatatc
ttaaaggatgctggtttgatagactctgatggaagtacaaacaacagtttgagccataat
caatcattggtccgtggtatcatttgttctgggctttttcctgggatatcatctgttgtg
catagggaaaactcaatgtccttcaagaccatggatgatggccaagttcttgtgtatgct
aattcagtgaatgctaagtaccagaccatcccttatccatggctagtctttggtgagaag
gtgaaggtaaatgctgttttcatccgtgattcaaccggagtatcagattccatactgatc
ctatttggtggcgccgttacaaaagggagtgtggctgggcacttgaagatgctcgatggt
tacattgatctatttatggatcccagcctgtccgagtgctacttgcaacttaaagaagaa
ttggataagcttgttcagcagaagcttgaagacccggcctttgacattcacaaggaaggc
aagtacattctatttgctgcacaagagcttgctgcaggtgacctatgtgaaggaagattt
gtgtttggccgagaaacgagccgagcaaggcttcaggataacgatgacggcaaaagcaac
atcgtgaaggatgggatgaacccaaagagcctgctgcagaccttactgatgagggcaggc
cacacgcctccgaagtacaagacaaagcacctcaagaccaacgagttcagggccatagtg
gagttcaaagggatgcagtttgtcgggaaaccgaagaggaacaagcagatcgcggagagg
gacgccgcgattgaagcgctgggatggttgacgcaaacatccggtacgaagctccaagac
gagggcgacgactccccgcttgacctgactgataacatgctgaagctgcttagtcgacca
aggcggcacatgagaaataattctaggaaatga
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