KEGG   Brachypodium distachyon (stiff brome): 100832497
Entry
100832497         CDS       T01717                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2 isoform X2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100832497
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdi03021]
    100832497
Enzymes [BR:bdi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100832497
Transcription machinery [BR:bdi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     100832497
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 100832497
NCBI-ProteinID: XP_010237620
UniProt: I1IKY3
LinkDB
Position
4:16411331..16421400
AA seq 1213 aa
MEEPPRDNAHSKNGLEPELEPMILDDNEESGSHTMDDSNGQSSMDIDIEGSSMGEQIPAD
MNLTSLEKFCKEASRSFFEEIGLISHQINSYNEFISHGLQELFDSLGEVTVEPGYDPSKK
GPGGWRHAIIKFGKVKLEEPVFWSGKIDIDEESLKLKPRHARLQNMTYSSKMEVEVNIQV
YSMEKSDKAKTGNDHFGHKRDIINETHWVTIGRLPVMVNSDLCWLHKLGESDCLFDSGGY
FLIKGMEKIFIAQEQRCLTRIWVADQPCWNVSYLSEMKRRRVYIKLIDSTTNNDLNGAKI
ISISFLYANMPIWLLFFALGVSSDKEVFDMIDMKDCDASVINAIYATIRESDELCEGFRQ
SDKARKYVDDLVKSSKFPPAEPFTDYVAKYLFPGISGNRNKSFFLGYMVKCLLMAFTGKR
KCDNKDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQRDLNSDRDLQFPLRYLDASI
ITNGINRAFATGSWSHPYIRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKVGDAR
YPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEISAKE
IPKMDKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVFSDAG
RILRPLLVVENLNKIRKSKDRPYTFQALLQQEIIEYIGVEEEEDIQCAWGIRHLFPSSGE
KVSGYTHCELDLSFLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNPLTRVDTH
SHQLYYPQRPLFKTVTADCIGRSDYTIGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSL
VMNRASLERGMFRTEHIRSYKAEVETKEPTKRLKLKEKVDFGKMQSKRGRVDNLDDDGLP
YVGASLQSGDIVIGKVSESGEDHSIKMKHTEKGMAQRVLLSANDEGKNFAVVTLRQVRSP
CVGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLEAALGKG
IALGGAMRYATPFTPASLEVISEQLHKAGFSRSGAESVINGRTGERMHSLIFMGPNFYQR
LTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFML
SDFSQMHICRTCERVANVVMRSVPGGKRIRGPYCGFCRSSENTVRIAVPYGAKLLYQELF
CMGICLKFQTEIC
NT seq 3642 nt   +upstreamnt  +downstreamnt
atggaagagccaccaagggacaatgcgcactcaaaaaatggccttgagcctgagctggaa
cctatgatactggatgacaatgaggagagtggatcccataccatggatgattcaaacggg
cagtcttctatggatattgacatagaggggtcttcaatgggagagcagattccagctgac
atgaacttgacaagcctagagaaattttgcaaggaagcatcaaggtccttttttgaggaa
atcggtctgattagccaccagataaactcttataatgagtttatctcgcatgggctccag
gagctttttgattcgctaggcgaagtgactgttgaacctggttatgatccttcaaagaaa
ggaccaggtggttggaggcatgccatcatcaagtttgggaaagtgaaacttgaagaacct
gtattctggtctggcaaaattgatattgatgaggagtcactcaagctcaagccaagacat
gctcgcctccaaaatatgacatattcctccaaaatggaagtagaagtgaatattcaggtt
tattctatggagaaaagtgataaggctaaaacagggaatgatcattttggtcacaagaga
gatattattaacgaaactcattgggtgactattggccgccttccagttatggttaattca
gatttatgctggctgcataaacttggggaaagtgactgcctttttgactctggtggatac
tttttgatcaagggaatggagaagatatttatcgcacaagagcaaagatgcttgaccagg
atttgggttgctgatcagccttgctggaatgtctcttatttatctgaaatgaaacgaaga
cgcgtatatataaaactgattgattctacaaccaacaatgatttaaatggggccaaaatc
atttccatttccttcttgtatgccaatatgccaatttggttacttttttttgccctggga
gtatcatctgataaggaagtatttgatatgatagatatgaaagactgtgatgcttctgtt
atcaacgcgatatatgcaactattcgtgagtctgatgaactgtgtgaaggctttcgccag
tccgataaagcccgcaaatatgtcgatgatttggtcaagagttcaaaatttcctccagca
gagccttttactgattatgttgctaaatatctctttcctggtataagtgggaacaggaat
aaatcatttttcttaggttacatggtcaaatgccttctaatggcttttactgggaagcgc
aaatgtgataataaggatgattttcggaacaagaggctggagctacctggtcaattgctt
ggaagagaacttcgtgcacatcttaggcatgcagagagactcatggttaaggcaatgcag
agagatttgaatagtgaccgcgatttacaatttcctctgcgatatcttgatgcgtcaatt
attactaatggtataaatcgtgcattcgctactggttcttggagccatccctacataaga
aacgaaagatgctcaggtattgttgcaaccttgaggagaacaaatcctcttcaaatgatg
tcagacttgaggaaaagtcgtcagcaggttgcttatgctgggaaagttggtgatgcaaga
tatcccaatccatcctactggggaaagatgtgttttatgtccacacctgatggtgaaaac
tgtggactcgtgaaaaatctggctgttactgctattgttagctcaagagtggtacagcca
ttgattgacagatttgtttcttgtggaatgaataagctggatgaaattagtgctaaggag
attcctaaaatggacaagatcttcctgaatggcgattggataggatcctgtactgatcca
gcttcatttgttatgcgtttaaggtgcatgagacgcgccaatctgattgatccacaggtt
gaaatcaaaagggacaagcaccaatttcctggggaagtacgggtgttttctgatgcaggg
agaatcctcagacctcttcttgtggtcgagaacctaaataaaattagaaaatcgaaggac
cgtccttacacttttcaggcactattgcaacaagaaataattgagtacattggtgttgag
gaggaggaagatatacaatgtgcctggggaatcaggcacctatttccgagcagtggagag
aaggtttctggctatactcactgtgagctggatctttcttttctgctgggattaagttgt
ggtcttatccctttcgcaaatcacaattttgctcgaagagtactgtaccagtcggaaaaa
cattcacagcaagctattggatattccacaacaaatccacttaccagagttgatactcat
tcccatcaactttactaccctcagagaccccttttcaaaacagttacagctgattgtatt
ggcagatcagattatactattggaagaaaagatgactttgctaggccagaatatttcaat
ggacaaaatgcgatagttgcagtcaatgttcatcagggatttaaccaagaggactccctg
gttatgaacagggcttctcttgaacgtggtatgtttagaactgagcacatcaggagctat
aaggcagaagtagagaccaaagagcccaccaaacgactgaaactgaaggaaaaagtagac
tttggtaaaatgcaaagcaagagaggacgggttgacaatcttgatgatgatggattacca
tacgtgggtgcaagtcttcagagtggtgatatcgtcattgggaaagtgtcagaatctggc
gaagatcatagtatcaagatgaagcatacggaaaagggaatggcccagagagtgttgctc
tcagccaatgacgaggggaagaattttgccgttgtaactctgagacaggttcgatcacct
tgcgtcggagataaattttctagcatgcatggccagaaaggtgttattggttttctagaa
tctcaggagaacttcccttttacttgccaaggaatagttccagatgttgtgataaatcca
catgcctttcctacccgtcaaactccaggccagctgcttgaagctgctttgggaaaggga
atcgctcttggtggtgcaatgcgatatgcaacaccattcaccccagcatcacttgaagtg
atctcagaacaattgcacaaggctggattttcgagaagcggggctgaaagtgttatcaat
ggccgaacaggcgaaagaatgcactcattgattttcatgggtcctaacttttaccagcgg
ctgactcacatggcggaagacaaggtaaaattccggaacactgggccagtgcaccccctc
acaaggcaacctgtggcggacaggaaaagatttggcggagtgaagtttggagaaatggag
cgggactgcctccttgcccacggggcagctgccaacctccatgagcggctcttcatgctc
agcgacttctcacagatgcacatttgccgaacatgtgaacgggtggcgaacgttgtcatg
aggagtgtccctggaggaaagaggatccgaggcccgtactgcggattctgccgatcttca
gagaatacagttaggatcgccgtgccgtacggtgcgaagctcctctaccaggaactcttc
tgcatggggatctgcctcaagttccagacggaaatctgttag

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