Brachypodium distachyon (stiff brome): 100832824
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Entry
100832824 CDS
T01717
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100832824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bdi04131
]
100832824
Membrane trafficking [BR:
bdi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100832824
Hops complex
100832824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
Clathrin
VPS11_C
TPR_Vps41
zf-C3H2C3
Beta-prop_WDR36-Utp21_1st
zf_RING_Vps8_fungal
DUF8145
zf-RING_5
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
100832824
NCBI-ProteinID:
XP_003579603
UniProt:
I1IX17
LinkDB
All DBs
Position
5:10381359..10386795
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AA seq
956 aa
AA seq
DB search
MYQWRKFEFFEEKAASRGGGGGAPAVPAEIAGRVTCCSGGRGRVAVGCDDGTVGLLDRGF
RLSYGFQAYASSVLFLQQLKQRNVLVTVGDDDQASSQSSAICLKVFDLDKVQEEGSSTTT
PFCVQILRIFTNQFPQAKITSFLVLEEAPPILLIAIGLDNGSIYCIKGDIARERITRFTL
QVEAVSDGSSSPITGLGFRVEGPAHQLFAITPSSITLFGLHYQPPRRQTLDQIGCETNAV
AMSDRMDLIVGRPEAVYFYEVDGRGPCWAFDGEKKFVGWFRGYLLCIIEDQRSRKNTLNV
YDLKNRLIAHSMPVGDVSHLVTEWGYIILIMSDKRILCIGEKDMESKLDMLFKKNLYTVA
INLVQSQQADPASTAEVLRKYGDHLYGKQEYDEAMSQYIHTIGHLEPSFVIQKFLDAKRI
YNLTNYLEKLHDRGLASKDHTTLLLNCYTKLKDVEKLNHFIKDEDGVGEIKFDVETAIRV
CRAAGYHEHAMFVARKAGRHELYLKILLEDLARYDEALQYISGLEANQAGLTVKEYGKIL
VDHRPSETVEILLRLCTDGGDPTTRRGSNSMRLLMIPSPMDFVNIFVHSPQYLMEFLENY
IKAVKDSPAQMEIHNTLLELYISKDLSFPSISQENGFEDTIKERKGKEVANGYRSGTTEK
GNLGNAGTKMAKDIADRQRKGLALLKSAWTSEMEDALYSVDLALIICNANAFKDGLLFLY
EKLKLYKEVISCYKQAHDHEGLIACCKKLGDSSQGGDPSLWGDLLKHFGELGEDCSKEVK
EILTYIEKEDVLPPIVVLQTLSKNPCLTLSVVKDYIARKLEQESKLIEDDRKSIDKYQEE
TELMKREIEDLKTNAKVFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAA
EYRSVMEAKQKLELNSRDQNLFFRELRGSKDGFSVVADYFSKGVVSKTTIPPENAP
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgtaccagtggcgcaagttcgagttcttcgaggagaaggcagccagccgcggcggggga
ggcggtgccccggccgtgccggccgagatcgcgggccgcgtcacctgctgctcgggcggc
cgcggccgcgtcgccgttggctgcgatgacggaaccgtggggctcctcgaccgcgggttc
cgcctctcctacgggttccaggcctacgcctcctccgtcctcttcctccagcagctcaag
caaagaaatgttcttgtcacggttggagatgatgatcaagcatcttcgcagtcatcggca
atctgtctaaaggttttcgatcttgataaagtacaagaagagggttcaagtacaacaact
cctttctgtgttcaaattttgcgtatcttcacgaatcagtttcctcaggcaaagattaca
tcatttttggttctggaagaagcccctcccattctgttgattgccatcggattggataat
ggttccatttattgcatcaaaggtgacattgcacgtgagcgtatcacacgcttcacgttg
caagtagaggcggtttcagatggctcaagttcacctattactggtcttggtttccgagtt
gaggggccagcacatcagctctttgccataactcctagttccataaccttgttcggcttg
cattatcaaccaccgaggaggcaaacacttgatcagattggttgtgagaccaatgctgtt
gcaatgagtgaccgcatggatctgattgttggtagacccgaagctgtgtatttttatgaa
gttgatggtagaggtccttgttgggcttttgacggtgagaagaaatttgtaggttggttt
cggggctatttactttgtattatcgaagatcaaagaagccggaagaatactcttaatgtt
tatgatcttaagaatcggctaattgctcatagcatgcctgttggggatgtttcacatttg
gtcactgagtggggctatattattctcataatgagtgataaaaggatactttgcattgga
gagaaagacatggaaagtaagctggatatgttattcaagaaaaatctttatacagttgca
atcaatcttgtacaaagtcagcaagctgatcctgcttcaactgctgaggttctacggaag
tatggtgaccatctgtatggcaaacaagaatatgatgaggccatgtctcaatatatccac
accattggtcaccttgaaccgtcgtttgttatacagaagttccttgatgcaaagcgcatc
tacaacctgacaaattatctagagaagttacatgatagaggattagcgtcgaaagaccac
accacccttttgttgaattgctataccaaattgaaagatgtcgagaagctgaaccatttc
atcaaagatgaagatggggtaggtgaaatcaagtttgatgtggaaactgccataagagta
tgtcgcgcagctggatatcatgaacatgctatgtttgtggccagaaaggctgggaggcat
gagttgtatttgaagattttacttgaggatcttgctagatatgatgaggcgctgcagtat
atatctggccttgaggcaaatcaagcaggtcttactgtaaaagaatatggaaaaattctt
gtggatcatagaccttctgaaacagttgaaatactgttgaggctttgtactgatggtgga
gatcctactaccaggagaggttcaaatagcatgcgcttgcttatgataccttcgccaatg
gacttcgtaaacatttttgtgcacagcccacagtatctcatggaatttctagaaaactat
atcaaagcagtcaaggattcacctgctcaaatggaaattcataacacccttctggagctc
tatatatcaaaagatttaagcttcccatctatctcacaagaaaatggctttgaggatact
attaaagaaagaaaagggaaagaagttgcaaatggctatagatcaggcacaacggagaag
gggaaccttggaaacgcaggtactaaaatggcaaaggatattgctgataggcaaaggaaa
gggcttgcattactcaagtctgcctggacatctgagatggaggatgctttgtattctgtt
gatcttgctcttattatttgtaatgcaaatgcattcaaagatggattgttgtttctgtac
gagaagctaaaactctacaaagaagttatcagttgctacaagcaagctcatgatcatgaa
ggtttaattgcatgctgtaagaagctcggtgactcatctcaaggaggggatccatctcta
tggggtgatctgttgaagcatttcggggagctcggggaagattgctctaaggaagttaaa
gagatcttgacctacattgagaaggaggatgttttgcctccaattgttgtgctacagaca
ctgtcaaaaaacccatgtttgacgctctcagttgtcaaggattacattgctcgtaaactt
gagcaagaatcaaagctcattgaagatgatagaaaatctattgacaagtaccaggaagag
acagaattgatgaaaagggagatagaagacctcaagacaaacgcaaaggtttttcagcta
agcaagtgtactgcgtgcactttcacccttgatcttcctgctgtccatttcatgtgcatg
cactcattccatcttcgctgcctcggcgacaatgagaaagaatgcccggaatgtgcagct
gaatatagatctgttatggaggcaaagcagaagctagaactaaattcgagagatcaaaac
ctctttttcagggagttgaggggttcaaaggatggcttttctgtggtcgcggactatttt
agcaagggcgtggtgagcaaaacaaccattccacctgaaaatgccccatag
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