Brachypodium distachyon (stiff brome): 100832909
Help
Entry
100832909 CDS
T01717
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100832909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100832909
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100832909
mRNA degradation factors
5'-3' decay
Decapping complex
100832909
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
100832909
NCBI-ProteinID:
XP_003578526
UniProt:
I1IS99
LinkDB
All DBs
Position
4
Genome browser
AA seq
722 aa
AA seq
DB search
MESGDTKFDASQYAFFGNNVTEEVELGGLDDDDAFVEPGDEEYAPTYGRDPLEGGGVSSF
TNVDDLAGAFSKLSRTVNEPKQPGIFSRGGSISGQSSAADWAQEPESLYWPTQPVLEAEQ
GLDNKNWSQPPHPAHFTDSRLHRTSSSPQDAQYNPNEPILGPRPSPLHRMSSYPQQEPQY
NTTEPIRGNGTMFAPALMQRPNGLVPPQMPPLRQQNGMLPIQQSPPQFSQLHAQMLGPQH
SPPQNLHMFGPRHPPPQMMGRFDPNLVMPDLSDPRARSMLHHGRQGLRYPPHGFELNNMR
MDNRFQRFRSKYMSTEEIENIARMQQAATQINDPYIDDYYHQACLARKTAGAQLKRHFCP
TLIRDPSSRARSRDEPHAYLQVDALGRLPFSSIRRPRPLLDVEEASEPSDNITEKSASKP
LDQEPMLAARITIEDGLCLLLDVDDIDRLLQFSQQQDGGMQLRNRRQALLEQLAESLQLV
DPLTPNKNASLSPNDDLVFLRIVSLPKGRKLLSRYLELVPSGSELVRIICMAVYRHLRFI
FGDLPSDSSIAGTTIKLMSAVSTCVLRMDLSGLSACLAAIACSSQQPPLRPLGYAAGDGA
SVIIKSVLDRATELLTDQHVASTYSIQNRALWQASFDAFFRLLMEYCMSKFDTVVHTVQM
QPAAAAVIRSETPVELLRASLPHTNEYQRKQLLSFAQRSMPVNNSSSHGSGNVPMASESV
QS
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaggcgatacaaaatttgatgcatcacagtatgctttctttggtaacaatgtg
acagaggaggttgagcttggtggattagatgatgatgatgcttttgttgagcctggtgat
gaagaatacgctcctacatatggaagggatccattggagggtggaggtgtaagttcattt
actaatgttgacgatcttgctggagcattctcaaagctgtccagaactgttaatgaacca
aagcaacctggaatatttagtcgtgggggttcaatttctggacaaagttctgctgcagat
tgggcacaagaacctgaatcattatactggcctacacagcctgtattggaggctgaacaa
gggctggacaacaagaactggtctcaaccaccccatccagcccactttactgattccaga
cttcacaggacatcctcatccccgcaggatgctcagtataatcctaacgagcctattctt
ggaccaaggccatctcctttgcaccggatgtcatcatacccacaacaagagcctcaatac
aacactaccgaaccaattcgtgggaatggtaccatgtttgcaccagctttgatgcagcgt
ccaaatggattggtaccacctcaaatgccacctcttcgtcaacaaaatggaatgctccca
attcaacagtctccaccccagttctcgcaactacatgcccagatgctcggcccccagcat
tctccaccacaaaatctgcatatgtttggtcctcggcatcctccaccacaaatgatgggt
agatttgatccaaatttggttatgcccgacttgagtgaccctagagcaagatcaatgttg
catcatgggagacagggcctacgttatcctccccatggttttgagcttaacaatatgagg
atggacaataggtttcagcggttcagatccaagtatatgtctactgaagaaattgagaac
attgcaagaatgcagcaagctgccactcagatcaatgatccatatattgatgattactat
catcaagcttgtttggctagaaaaacagcaggagcacaactgaaacgccacttctgtcca
accttaattagagacccatcttctcgtgcacgcagtagagatgagccacatgcctatctc
caggttgatgctctcgggaggctcccattttcttcgattcgcaggccccgtccactcctt
gatgttgaagaagcctctgaaccaagtgataacattacagaaaaatctgcttcaaaacct
cttgaccaagaaccaatgcttgctgctagaatcacaatcgaagatggtctttgcctacta
ctggatgtggatgatattgatcgtttgctgcaatttagtcaacagcaagatggtggcatg
caactgagaaacagaaggcaggctctccttgagcagctggcagaatcactgcaattagtt
gatccacttacacctaataagaatgcatctctgtcaccaaatgatgatctggtttttctc
cgcatagtatctctgccgaagggccggaaactactttctcgttaccttgaacttgttcct
tcaggcagcgagctcgtgaggattatttgcatggcagtctaccggcatctaagatttata
tttggcgatttgccctctgatagcagcatagctggaacaacaattaaacttatgagcgct
gtatccacctgtgttcttcggatggacttgagtggactcagtgcttgtcttgcagctatt
gcgtgttcgtcacagcaaccacctcttcgacctcttggatatgctgcaggtgacggggct
tctgtcatcataaagtccgtactggacagagcaacagagcttctcactgatcagcatgtt
gcctctacttatagcatacagaaccgagctctatggcaggcatcctttgatgccttcttc
cgtctgcttatggagtattgcatgagtaagtttgatactgtggttcatacggtgcaaatg
caaccagctgctgcagctgtgatacgcagcgaaacgccagtggagctgttgcgtgccagt
cttcctcatacaaacgagtatcagcgcaagcagttgctcagttttgctcaacgctctatg
cccgtcaacaactctagttctcatgggtctggtaatgtacccatggcatcagaatctgtc
cagagctga
DBGET
integrated database retrieval system
