Brachypodium distachyon (stiff brome): 100832993
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Entry
100832993 CDS
T01717
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100832993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100832993
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100832993
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Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_12
SRP_TPR_like
TPR_MalT
Coatomer_E
TPR_8
Motif
Other DBs
NCBI-GeneID:
100832993
NCBI-ProteinID:
XP_003576897
UniProt:
I1IIT6
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All DBs
Position
4:7551679..7556989
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AA seq
824 aa
AA seq
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MEPAASKEAPPTQPQSASEEDGMLSVTAAMARDASVLFQSHRYAECAEVLAQLLLKKEGD
PKVLHNMAIAESFVDGCPYPKKLLGILGNVKKRSDELACASREQSDSANGVGNNASSGPR
GGGIVPPISAAHNTTAYGEEFDTTIITFNTALILYHLHDYESALSVLEPLYRNIEPIDET
TALHVCFLLLDITLALQDALKAADIIQYLERSFGVANTMNHNENAGTVQQQSAQPKPHAK
SNTPPDSDSNICPGASDILSVGSFSEDTLEFESLYSTLDRGNQLGRPILNEFSRASADRA
ATAADLKVRLQIYKVRLLLLTRNLKVAKRELKVLMNMARGRDSSIELLLKSQLEYARGNY
RKAVKLLSTPNNRTEPVMLAMFYNNLGCILHQQRSNHSSILCFSKALKYSLSLRSEKPLK
LSAFSQDKSCLISYNCGIQHLMCGKPLLAARCFREAMPLLYHRPLFWLRFAECSLLALEK
GFLTASGATSCNDEVEIHVVGSGKWRHLVINPVKSRSCFSDSGSSDKHGNLITLRFARQC
LLNAQLLMDDFEQENSVIASDTEDCNQGAQCQKSSGQNTMSVESKTPSGPTQANANGEQK
GAASLNATLQSSLGMYDAICRKENLKIRQAILGDLAFIELCLENPLKALSIAKLLQQLPD
CSRMYLFLSHVYAAEALCALNRPKEAAEQLTVYLRDGNDIELPYSVENCEKAPVEKDSDG
EDSHAPAVTKLTSEESQHSLSLSPEDACAVVYVDLGMTAAMQGDLEQANYMVNRGFAMLP
NNPRALLASVYVDLLQGKVQGAMGKLRQCRNVRFRTTGSVAASR
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggagcccgcggcgtcgaaggaggcgccgccgacccagccacagtctgcctcggaggaa
gatgggatgctctctgtgacagcagctatggcgagggacgcctccgtgctgtttcagagc
caccgttacgccgagtgcgccgaagtgctcgcgcagctcctgctcaagaaggagggcgac
cccaaggtccttcacaatatggctatcgcagaatcgtttgtggatggttgtccttatcca
aagaagctgcttggaattctaggcaatgttaagaaaagaagtgacgaacttgcctgtgca
tctagagaacaatctgattctgccaatggggtaggaaacaatgcttcttcgggaccaaga
ggcggtggcattgtaccaccgatttctgctgcacacaatacaacagcttatggagaggag
tttgacacaaccatcataacatttaacactgctctcatcctttaccatcttcatgattac
gaatctgcactatctgttttggagccattgtaccgaaatattgaaccaattgatgagaca
actgctctccatgtgtgttttctgttactggatattacattagctttgcaagatgcattg
aaagctgcagacatcattcaatacttggaaagatcatttggagtagctaacactatgaat
cacaacgaaaatgctggcacagttcagcagcagtctgctcaaccaaaacctcatgcaaaa
agtaacacacctccagattctgattcaaacatttgtccaggtgcatctgatattctttca
gttgggagtttctcagaagatactctggagtttgaatctctgtactctacgttggatcgt
ggaaatcaattgggcagacctatcttaaatgagttctcgagggcatcagctgatcgtgct
gccactgcggctgatttgaaagttagactacaaatttacaaggtccggctactacttctc
acaaggaacctgaaggttgccaaacgagaactcaaagttttaatgaacatggcacgtggt
agggattcatcaatagagcttctcttgaaatctcagctggagtatgcacgaggaaactat
aggaaagcagtgaagctgttgagcacacccaataatcggactgaaccagtaatgctagcc
atgttctacaataatcttggttgtatactccatcagcagagatccaaccattcatcaata
ttgtgctttagcaaagcactgaaatatagcttgtctcttcggtcagagaaaccgttgaag
ctgtctgcgttttcacaagacaaatcttgtcttatatcatacaactgcggtatccaacat
ttgatgtgtggtaaacctctgttagcagctcgctgttttcgtgaggccatgccgcttttg
taccatcggcccctcttttggctccgttttgcagagtgtagcctgctagcactagaaaag
ggcttccttactgcaagtggtgctacttcatgcaacgacgaggttgaaattcatgttgtg
ggatcagggaaatggcgtcacttagttatcaatccggttaagtccagaagttgtttttca
gattctgggagttcagataaacatggaaatttgatcacacttagatttgctagacagtgt
ctactcaacgcccaacttttaatggatgattttgagcaggaaaattctgtgattgcctca
gatacagaggattgcaaccaaggagcacaatgccagaaaagttctggtcagaacacaatg
agtgtggaatcgaaaacaccttctggtccaacacaagctaatgcaaatggagaacaaaag
ggagcagcgagcttgaatgccactctgcagagctctcttggtatgtatgatgccatctgt
agaaaagagaacctcaaaattcgacaagccatcctgggggacttggcgttcattgaattg
tgtcttgagaatcccttgaaagctttgtctattgccaagttgctgcagcagcttccggac
tgctcaaggatgtatttgttcctcagtcatgtatacgcagctgaagctttgtgtgcactg
aatagaccaaaggaggctgctgagcagttgactgtttatttgagagatggcaatgacatt
gagctgccctacagtgttgagaactgtgaaaaggcccctgttgagaaagacagcgatggt
gaagactcgcacgctcctgcagtcacaaaacttacctcagaagaatctcagcattcgttg
tctctcagtcctgaggatgcttgtgctgttgtgtatgttgaccttggcatgaccgctgcg
atgcagggggacctcgagcaggcaaactacatggtgaatcgtggttttgcaatgttaccc
aacaatccaagggcattgctggcatctgtttatgtggaccttctgcaggggaaggtgcaa
ggggctatgggaaagctgagacagtgtagaaacgtgaggtttaggaccactggtagcgta
gcagccagcagatag
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