KEGG   Brachypodium distachyon (stiff brome): 100833314
Entry
100833314         CDS       T01717                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100833314
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bdi03019]
    100833314
Messenger RNA biogenesis [BR:bdi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     100833314
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_EML_2 WD40_Prp19 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_MABP1-WDR62_2nd WD40_Gbeta ANAPC4_WD40 WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_Aladin NBCH_WD40 Beta-prop_EIPR1 Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_TEP1_C eIF2A Beta-prop_DCAF12 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N Ge1_WD40 CFAP43_N Beta-prop_Nup120_160 Beta-prop_DCAF4 Beta-prop_VPS8 Beta-prop_WDR11_1st Tricorn_2nd WD_LRWD1 Beta-prop_RIG_1st WD40_like Beta-prop_ACSF4 Beta-prop_pof12 Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 100833314
NCBI-ProteinID: XP_003577267
UniProt: I1IJL2
LinkDB
Position
4:complement(10680858..10683373)
AA seq 322 aa
MKLAGLKSVDGAHEESVWAAAWAPAAEHRPTALLLTGALDETVRAWRADDLAAASPPARG
HALGVVSLAAHPAGVIAAAVSLDSYIRVFDVDSGASVATLDAPPSEVWGVQFHPKGVALA
AAGGGSGSVKLWDTEKWQPIASLPVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSMD
GTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTACDDAHIHIYDAKEKGLIGAM
SGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINARASVQTMSNHSDQVWAVAFRPPGGE
GVRAGRLASASDDKSISLYDYS
NT seq 969 nt   +upstreamnt  +downstreamnt
atgaagcttgcggggctcaagtcggtggacggggcgcacgaggagtcggtgtgggcggcg
gcgtgggcgccggcggcggagcaccgcccgacggcgctgctcctcacgggcgcgctcgac
gagaccgtccgcgcctggcgcgccgacgacctcgccgccgcgtcgccgccggcgcggggc
cacgcgctcggggtggtatcccttgccgcccacccggccggggtcatcgccgccgccgtc
tccctcgacagctatatccgcgtcttcgacgtcgactccggcgcctccgtcgccacgctc
gacgcgccaccgtctgaggtctggggcgtccagttccaccccaagggtgttgctctggct
gctgctggtggtggcagtgggtcagtgaaactctgggacacagagaagtggcagcctatt
gcgagccttcccgttcctcgtccagagggagctcgccctgataaaacaggcagcggcaag
tttgttctttcagttgcttggagcccagatggcaagctgttagcctgcggatccatggat
ggcaccatcgcggtgtatgatgctgttcgcatgaagttcctccatcacctggagggccac
catatgccagtgaggtcgatggtgttctctccagtggatccccatgtgctcttcacggct
tgcgacgacgcccacattcacatatatgatgccaaggagaagggcctcatcggggccatg
tccgggcacgcgagctgggtgctgagcattgacgtgagcccagatggcatggcggtggca
accggctctagcgaccgcaccgtccggctctgggacatcaacgcgagggcgtcagtgcag
acgatgagcaaccactctgaccaagtttgggctgtagcgttcaggccgccaggaggcgaa
ggagtccgtgcaggccgcctcgcaagcgcctcggacgacaagagcatctccctatatgat
tactcgtag

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