| Entry |
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| Name |
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
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| KO |
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| Organism |
bdi Brachypodium distachyon (stiff brome)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:bdi00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100833387
09124 Replication and repair
03420 Nucleotide excision repair
100833387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:bdi03021]
100833387
03036 Chromosome and associated proteins [BR:bdi03036]
100833387
03400 DNA repair and recombination proteins [BR:bdi03400]
100833387
Enzymes [BR:bdi01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100833387
Transcription machinery [BR:bdi03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100833387
Chromosome and associated proteins [BR:bdi03036]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
100833387
DNA repair and recombination proteins [BR:bdi03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100833387
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
2:36465091..36470998
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| AA seq |
758 aa
MKFDLEGLTVHFPYAAIYPEQHAYMGDLKRALDARGHALLEMPTGTGKTAALISLITSYS
LTNPSRPLRLLYCTRTVHEMEKTLAELRLLFSHLPPAAARSLLALGLSSRKNLCVHPQAS
ASAARDSVDTACRRLTASWVRDKAASDPDSTPLCDFFESFDRAAAAGDLASYMPPGVYTL
ADLRSLGRERRICPYYLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDAWLANPSLPDDILKEAVPGNIRRAEHFLAVLKRLVRFLDGRLETENVENEMPVSF
VASIHSQAGIDQRMLRFCYDRLQSLLLTLEITDTDEFMHIQTICDFATLIGTYTRGFSII
IEPYDDRMPEIRDPVIQLSCHDASLAIQPVFDRFQTVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVC
FFVSYSYMDGIVNNWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILRARLEYLRETFQIKEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHTA
REFLRRMAQPYDKTGSGGKKTLLTEEDLQDMARDAMEM |
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| NT seq |
2277 nt +upstreamnt +downstreamnt
atgaagttcgatctggagggcctgacggtgcacttcccgtacgcggcgatctacccggag
cagcacgcgtacatgggcgacctcaagcgcgccctggacgcccgcggccacgcactgctg
gagatgccgacgggcacgggcaagacggcggcgctcatctccctcatcacctcctactcc
ctcaccaacccctcccgcccgctccgcctcctctactgcacccgcaccgtccacgagatg
gagaagaccctcgccgagctccgcctcctcttctcccacctcccgcccgccgccgcgcgc
tccctcctcgcgctcggcctctcctcccgcaagaacctctgcgtccacccccaggcctcc
gcctccgccgcccgcgactccgtggacaccgcctgccgccgcctcaccgcgtcctgggtc
cgcgacaaggccgcctccgacccggactccaccccgctctgcgatttcttcgagtccttc
gaccgtgccgcggccgccggggaccttgcctcttacatgcccccaggggtctacacgctc
gccgacctccgctcgctcggccgcgagcgccggatttgcccttactacctcgccaggcag
atggtcaagtacgccaatgtggtggtctacagttaccagtacctgcttgatcccaaggtc
gccagcatcgtgtcccgggagatgcagaaggagtgtgtcgttgtgttcgacgaggcgcac
aacatcgataacgtctgcattgaggcgctgagtgtcagcatacgcaagcagacgcttgaa
ggcgcagagagaaatctgcggcgcatctcgcaagagattgataggttcaaggccactgat
gccaataggcttcgtgctgaatacaataggctggtggatggattggcgcagagggggaat
ctgccaatatcggatgcttggctcgcgaatccatccttgcctgatgacattctaaaggag
gctgtgcccggaaatatcaggagggctgagcattttcttgctgtattaaagaggcttgtg
agattcttagatggacgccttgaaacagagaatgttgagaatgaaatgcctgtttccttt
gttgcttccatccattcccaggctggaattgaccaaagaatgctgaggttttgttatgac
cgcttacagtctctattgcttaccttagagataaccgatacagatgaattcatgcacatt
cagaccatttgtgacttcgccacattgattggaacttacacacggggtttttctataatt
atagaaccctatgatgatagaatgcctgaaattcgtgatcctgtcattcagctgagttgt
catgacgcttcactcgcgatacagccagtctttgatcgtttccaaactgtggtcatcact
tctggaactctcagcccaatcgatctgtaccctcgtcttttgaattttaatcctgttata
agcaggagcttcacaatgtccttaacaagggattgcatatgtcccatggtattgacaaga
ggaagtgatcagctccctgtgagtacgaagtttgatatgcgtagtgatcctggtgttgtg
agaaattatgggcgcctcttgctagaaatggcttctgcagttccagatggcatcgtctgt
ttctttgtcagttactcctatatggatggcattgtcaacaactggaatgaaatgggaatt
ttacaggacattatgcagcataagttggtattcatcgaaacaccagatgttgttgagaca
acattggcccttgataattacagaaaagcatgcgactgtggaagaggtgctgtcttcttc
tcagttgccaggggtaaagttgctgaaggtattgattttgatcgacactatggcagactt
gtcatcatgtttggtgttcctttccagtacacactcagcaagattttacgtgctaggttg
gaatatctaagagaaacttttcagataaaggagggtgacttcctgacatttgatgccttg
aggcaagctgctcaatgtgttggccgcgtgattcgttcaaaagcagattatggaatgatg
atatttgctgacaagagatacagtcgacatgataaacggtctaaactgcccgggtggata
ctgtcacacttgcacgatgcacacctaaatctgagcaccgatatggctctgcatacagcc
cgggagttcctccggaggatggcgcagccttatgacaagacgggcagcggtgggaagaag
acactcttgaccgaggaggacttgcaggatatggctcgggacgccatggagatgtga |
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