Brachypodium distachyon (stiff brome): 100833602
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Entry
100833602 CDS
T01717
Name
(RefSeq) protein RRP6-like 1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100833602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100833602
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
100833602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
100833602
NCBI-ProteinID:
XP_003573952
UniProt:
I1I472
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All DBs
Position
3:complement(27926745..27934358)
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AA seq
906 aa
AA seq
DB search
MEADEAPPPPPPPLWKQNKSAAAIESSSGPLAAAAARLSARSRAIPLARDFHFYNNFPSF
KSPVGAAATKAESSLGILGESPLLPKQQETPFPQEDLDEAYDWLVARNDDLLEMFGSSAD
EFKARREKEEAEGRKDAPQEISGDGFQVVYGKKKKKMGMGEEEIGRGQTFGASGSVKMAT
MDKAAASGTKAKVPFHIPSIARPQDLYRIVVDNTSKPFAHAFLERSDDGCRAIHPLEKLP
MEQLFDRRVPESEPLKPPALDDTPFTFVEDRKTLEVLATKLKSATEFAVDLEHNHYRSFQ
GLTCLMQISTRTEDFIVDTLKLRKYLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGIY
VCNLFDTGQASRILQMDRNSLEHLLHHFCGVVANKEYQSADWRLRPLPDEMTKYAREDTH
YLLYIYDLMRLRLVNESSDENDLLLEVCKRSNEICLQLYEKELLTDSSYLYIHGLKENEL
SARQLAVLSGLYQWRDSVARAEDESTGYILPNKALLEIAKQMPLTSGRLKRTVKSKNPFL
ERHLGHVITIIRNAIENSVAFESIAEQLKKGRLEELLVADAKNSTEDTEMIPAVNADNIE
SNFVLSDGSALVPTVITNVVTASSGNVTSGASLGNLQLGNITPETKSLVTLSGPTGLADT
EVLTNSSQQQVAKAKVQVSKRPTAFGALLGKSSSGRRPNLFPGFSSEQSKSKVDKIKSSV
VLPFHHFSGGVKSPATSLPVAELAYSEPESICNDPASQMEEVIQLDTGTHNHLPENCNVD
GQNHCEPEDTEMSSSPRELSSGNEQRFRSINESRNVQQNHKALEEPEFHDQLKPFDYAEA
RKNISFGEVKSERRKDNAVARAINKDSGDKRRTSKQPGGEEDEGDFQNPRRRQAFPPSGN
RSATYH
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggacgaggccccgccgccgccgccgccgccgctgtggaaacagaacaagtct
gcagcggccatcgagtcctcttcgggacccctcgccgccgccgccgcgcgcctctccgcc
cgctcccgcgcgatcccgctcgcccgcgacttccatttctacaacaactttccctcgttc
aagtcccccgttggcgccgccgccaccaaagccgagtcctccctgggcatcctcggcgag
tcccctctcctcccgaagcagcaggagacgccgttcccccaggaggacctcgacgaggcc
tacgactggctcgtcgcccgcaacgacgacctgctcgagatgtttggctcttccgccgac
gagttcaaggcgcggcgggagaaggaggaggccgaaggccggaaggacgcgccgcaggag
atatcaggggatgggttccaggttgtttacggcaagaagaagaagaagatgggcatgggg
gaggaagaaattggtagaggtcagacctttggggcttctggttctgtgaagatggctacc
atggacaaggctgcagcatcggggacaaaggcaaaggttcccttccacatccccagcatc
gcacggccgcaggacttgtaccgcattgtggtggataatacgagcaagccgtttgcgcat
gctttccttgagcggagcgatgatggttgccgtgccatacacccactggaaaaactccct
atggagcaactatttgacagacgtgttcctgaaagtgagccattaaaaccacctgcttta
gatgacaccccttttacatttgtcgaagaccggaaaaccttggaggtgctggcgacgaag
ctgaaaagtgcaactgagtttgctgttgatttggaacacaaccactataggtcttttcag
ggtctcacgtgcctgatgcagatttcaacaagaactgaggactttattgtggacactctt
aagctccgcaaatatcttggtgagaacttaagagaagtttttcaagatccaactaagaaa
aaggtaatgcatggcgcaggtcgtgatataatatggttgcaacgagattttggaatatat
gtatgcaaccttttcgacacaggccaggcttcaagaatcttacagatggaccgcaacagc
ctggagcatcttttgcatcatttctgtggagtggtagcaaacaaagaataccagagtgca
gattggagattgaggccacttcctgatgaaatgaccaagtatgctagagaagatacacac
tatctgctgtacatatatgacttaatgcgtttgagattggtgaacgagtcttcagatgaa
aatgatcttcttttggaggtttgcaagcggagtaatgaaatttgcttgcaactatatgag
aaggagctgctgactgattcatcatacctatacattcatggattgaaagaaaatgaattg
agtgcaaggcagctggcagttctgtctggtctatatcaatggagagatagtgttgctcgt
gctgaggacgagagcactggttatatattacccaataaggctctacttgagatagcaaag
cagatgcctttgacctctgggaggttaaaaagaacagtaaaatcaaaaaatccatttctt
gagcgccatcttggtcatgtcattactatcatcaggaatgcaattgaaaattctgttgct
tttgaaagtatagctgagcaactaaagaaaggaaggctggaagagttactggtggcagat
gcgaagaacagcactgaagacactgagatgattcctgctgtcaacgccgataatattgaa
agtaattttgttctgagtgatggatctgctctagttcccacagtgattacaaatgttgtt
actgcttcttccgggaatgttacgagcggagcttctttaggtaatttgcagcttggtaac
atcacgcctgaaaccaagagcttggtaactttgtccggccctactggactagcagataca
gaagtactcactaacagcagccagcagcaagtagcaaaggccaaagttcaagtatcgaag
agacctacggcttttggtgctctgttaggaaaatcatcttctggaagaaggccaaatctt
tttccagggttttcaagtgagcagagcaagagtaaggtggacaagataaagtcatccgtg
gtgctacctttccaccatttctcaggtggtgtgaaatccccggctactagccttccagta
gcagagttggcgtactccgaaccggagagcatatgtaatgaccctgcttctcagatggaa
gaagtgattcagttggacactggaacacataaccatcttccagaaaactgcaatgtagat
ggacagaaccattgtgaacctgaagacaccgagatgtctagctcccctcgcgagctatcc
tctggtaatgagcaacgcttccggtctatcaatgagagcagaaacgttcaacagaaccac
aaagcattggaagaacctgaatttcacgaccagctgaagcccttcgattatgccgaagct
agaaagaatatttcatttggcgaggttaaatctgagagaagaaaagacaatgcagtggcc
agggcaatcaataaggattctggagataaacggagaacttcaaaacaaccaggtggcgaa
gaggacgagggggatttccagaatccacgaaggagacaggctttcccaccttctggcaat
aggagtgctacgtaccattag
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