Brachypodium distachyon (stiff brome): 100833730
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Entry
100833730 CDS
T01717
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
100833730
Enzymes [BR:
bdi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
100833730
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
100833730
NCBI-ProteinID:
XP_024318941
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Position
4:31511658..31515386
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AA seq
749 aa
AA seq
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MSTAAVAVLTAAVLLLVVGEASWLPRWPPTPAPGVAGGVTLRIERHQVVVDNGLVQVTAS
NPQGQITAVRYLGERSNLLNFVVGGENTGGYWDVVWNYPDSGHPRGMIDMLDSTEFRVVT
STPDKVELSFRSAYDPTRRDSVRLAVDKRLVLLRGVSGFYPYAVFSHSAALPPLNITEAR
LAFKLGTSRFRYMAVSDKLQRAMPSAADRDPPRGRPLAYKEAVLLVNPAEPEFKGEVDDK
YMYSLDNKDNKVHGWISEGTTSSSPAPASPAAVGFWVVTPSNEFKSGGPMKRELTSHVGP
TALTMFMGTHYVGDAIVANIGDGENWTKVLGPVFVYLNSVPEKKQKQQKKSFWGGGRGAP
VVMDPKAALWEDAKARAAAEAAKWPYNFPESPEFHKAGERATVAGRLLVRDRYLVAAGAG
EDGMFPARNAYVGLAAPGQAGSWATESKGYQFWTRSAASGGFAITGVRAGLYSLYAWVPG
VHGEFVSSYPVNVTGAGEVLKLGDLVFAPPRAGPTVWEMGIPDRSAAEFFVPDPNQKLVN
RLFLGPAMAAEKFRQYGLWDRYAELYPNGADPVFTVGASHYSKDWFFAHVTRKLPVVVSG
SGGQQQQQYAPTTRQIKFALAAVASDGNYTLRIALAAAQMARLRIEVNPPPLESGKTRRP
AAVFTTPEFGEGNAIARHGDHGTWWSFEFGIQGRMLVEGENVISITQVRAFGAFLGVMYD
YIRLEAPPASRRDPTAAAAAMNGTSSIAA
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggcggcggtggcggttctgacggcggcggtgctcctgctcgtcgtcggcgag
gcgtcgtggctgccgcggtggccgccgacgccggcgccgggagtagctggcggcgttacg
ctgcgcattgagcgtcaccaggttgtggtggacaacgggctggttcaggtgacggcgtcg
aacccgcaggggcagatcacggccgtccgttacttaggcgagcggagcaacctgctaaac
ttcgtcgtcggcggcgagaacacgggcggctactgggacgtcgtctggaactaccctgac
tccggacacccaagaggcatgatcgacatgctggacagcacagagttcagagtggtgaca
tcgaccccagacaaggtagagctctccttcaggagcgcctacgaccctacccgcagagac
agcgtccgcctcgccgtcgacaagcgcctcgtcctcctccgcggcgtctccggcttctac
ccctacgccgtcttctcccactcagccgcccttccgccgctcaacatcacggaggcgcgc
ctcgccttcaagctcggcacctcccgcttccgctacatggccgtctccgacaagctccag
cgcgccatgccgtcggccgccgaccgggacccgccccgcgggcggccgctggcgtacaag
gaggccgtgctcttggtgaacccggcggagccggagtttaagggcgaggttgacgataag
tacatgtactcgcttgacaacaaggataataaggtgcacggctggatttccgaagggaca
acttcgtcttctccggctccggcgagtccggcggcggtggggttctgggtggtgacgccg
agcaacgagttcaagagcggcgggccgatgaagcgggagctgacgtcgcacgtggggccc
acggcgctcaccatgttcatgggcacccactacgtcggcgacgccattgttgctaacatc
ggcgatggggagaactggaccaaggtgctcggccctgtcttcgtctacctcaactccgtc
ccggagaaaaagcagaagcagcagaagaagagcttttggggaggaggaagaggagctcct
gtggtaatggatcccaaggcggcgctgtgggaggacgccaaggcgcgcgcggcggcggag
gcggccaagtggccgtacaacttccccgagtcgcccgagttccacaaggccggggaacgc
gccaccgtcgccggccgcctcctcgtccgagacaggtacctcgtcgccgccggagccgga
gaagacggcatgttcccggccaggaacgcgtacgtcgggctcgccgcgccggggcaggcc
gggtcgtgggcgacggagagcaaagggtaccagttctggacgcgctccgccgcctccggc
ggcttcgccattaccggcgtcagagccggcctctacagcctctacgcctgggtcccgggc
gtccacggcgagttcgtgtcttcttatccggtcaacgtcaccggcgccggcgaggtgctg
aagctcggggacctggtgttcgcgccgccgcgggccgggccgacggtgtgggagatgggg
atccccgaccggagcgccgccgagttcttcgtcccggaccccaaccagaagctcgtcaac
cggctcttcctcggccccgccatggccgccgagaagttccgccagtacggcctctgggac
cgctacgccgagctctaccccaacggcgccgacccggtgttcaccgtcggggccagccat
tactccaaggactggttcttcgcgcacgtcacacgcaagctcccggtcgtcgtctccggc
tccggcgggcagcagcagcagcagtacgcgccgacgacgcggcaaatcaagttcgccctg
gccgccgtggcgtccgacgggaactacacgctccggatcgcgctcgcggcggcgcagatg
gcgaggctaagaatcgaggtcaacccgccgccgctggagtcggggaagacgaggcggccg
gcggcggtgttcacgacgccggagttcggggaggggaacgcgatcgcgcggcacggggat
cacggcacctggtggagcttcgagttcgggatccaggggaggatgctcgtggaaggggag
aatgtgatcagcatcacccaggtcagggcgtttggggcgttcctcggcgtcatgtacgat
tacatccggcttgaagcgccgccggcgtccaggcgggaccccacggcggcggcggcggcc
atgaacgggaccagcagcatagctgcctga
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