Brachypodium distachyon (stiff brome): 100833758
Help
Entry
100833758 CDS
T01717
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03022
Basal transcription factors
bdi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100833758
09124 Replication and repair
03420 Nucleotide excision repair
100833758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100833758
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100833758
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100833758
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100833758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
VWA
Tfb4
IBR_1
Motif
Other DBs
NCBI-GeneID:
100833758
NCBI-ProteinID:
XP_003580110
UniProt:
I1IZI1
LinkDB
All DBs
Position
5:complement(18775263..18778422)
Genome browser
AA seq
428 aa
AA seq
DB search
MYGVGGGGGGFNASSTASGRRRNQEEDEEDDEEETGDGRVLEAWERAYADDRSWEALQED
ESGLLRPIDTKNLVHSQYRRRLLLRSAAAAVRIQKGLIRYLYIVIDLSRAASEMDYRPSR
MAVVAKCAEAFIREFFDQNPLSHVGLVTIKDGISHRLTDIGGSPESQIKALMGKLECSGD
SSLQNALELIHGYLNQIPSYGHKEVLILYSALNTCDPGDVMETVEKCKKSKIRCSVIGLA
AEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQRGAED
LISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVAPF
DEVTFKLGQKGGQNCYGCQQSLINSDSQSNLHVRCPKCNQHFCFDCDIYIHESLHNCPGC
ESQRSFSS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcggcggcggaggcggcttcaacgcttcctccacggcctccggccgg
cggcgaaaccaggaagaagacgaggaggacgacgaggaggagaccggcgacggccgcgtc
ctcgaggcctgggagcgcgcgtacgcggacgaccggtcgtgggaggcgctgcaggaggac
gagtcgggcctactccgccccatcgacaccaagaacctcgtccactcgcagtaccgccgc
cgcctcctcctccgctccgcggccgccgcagtccgcatccagaagggcctcatccgctac
ctctacatcgtcatcgacctctcccgggcagcttcagagatggattatcgtcctagtcga
atggccgttgttgcaaaatgcgccgaggcattcattagggaattctttgaccagaatccc
ttgagccatgttgggctagtgacaatcaaagatggcatttctcatcgactcacggacatt
ggtggcagtccagagtcacagattaaagcattgatggggaagcttgagtgttctggtgat
tcatctctgcaaaatgctctagaacttatccatggttatttgaaccaaattccttcatat
ggtcacaaggaagtattaattttgtactccgcactgaatacatgtgatcctggtgatgtc
atggagacagtagaaaaatgcaagaaatccaaaattagatgctccgttattgggcttgct
gcagaaattttcatttgcaagcatctttgtgaggagactggtggatcctacacagttgca
ctggatgagtctcacttcaaggaattgctgctcgaacatgctcctccaccacctgcgatt
gcagagtatgctgcagctaatttgattaagatgggttttccacagaggggagcagaggat
cttatctccatctgctcatgtcacaagaaaatcaagtccggggctgaaggttacatatgc
cccagatgcaaggttaatgtatgtgagctcccaacagagtgtcgaacttgtggactaaca
ctagttagttctccacacctggcaaggtcctatcatcatctcttcccagtagcaccgttt
gatgaggtgacgttcaagctaggtcaaaagggaggacagaactgttatggctgccagcag
agcctgattaactctgatagccaatctaatctccatgtccgatgtccaaaatgcaaccag
cacttctgctttgattgcgatatttacatccatgagagcttgcataattgccctggttgc
gagagtcagcgcagtttctcttcatag
DBGET
integrated database retrieval system
