Brachypodium distachyon (stiff brome): 100834233
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Entry
100834233 CDS
T01717
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100834233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100834233
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100834233
Spliceosome [BR:
bdi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100834233
Complex C
U4/U6.U5 tri-SnRNP related factors
100834233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_30
SRP54
PWI
AAA_16
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
100834233
NCBI-ProteinID:
XP_003557821
UniProt:
I1H519
LinkDB
All DBs
Position
1:60769288..60779707
Genome browser
AA seq
1051 aa
AA seq
DB search
MASDRQLRDWVSDKLMSLQGFTTTVVVQYVIRLAKECSSTGDLVGKLVEYGFSSSAETSS
FAADIYAKVPRRDRGISNYQKQEREAAKLVKKQSTYKLLDDDDENDIDNHTSIDNHTSSL
ASTPSKSRKHFRRRAEDQEDLKDDDETITHDSERSVRRRIEEADDEDGDETFDEEREIIR
DQQERAQLEKNMRERDAVNTRKLMERQLSKEEQEDLTRRSQAMDKNDTSDLRNFSRQAYL
QKRRDKKIDEIRDEILDHEYIFQDVKLTEAEEKDFRYKKKIYDHIKERVESADDIAEYKM
PEAYDMGEGNQEKRFSVAMQRYKDPEAKDKMNPFAEQEAWEEHQIGKSKLQFGSKDRKRS
SDEYQYVFDDQIDFVKSSVIEGTQFEDDSDQETIDAKDILKRELQDERKTLPIYKFRDEL
LKAVDEYQVIVIVGETGSGKTTQIPQYLHEAGYTARGKVACTQPRRVAAMSVAARVSQEM
GVKLGHEVGYSIRFEDCTSEKTMIKYMTDGMLLREFLGEPDLAGYSVVMVDEAHERTLST
DILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEVHYTKAPEA
DYIDAAIVTVLQIHVTQPPGDILVFLTGQEEIETVDEILKQRTRGLGTKIAELNICPIYA
NLPTELQAKIFEQTPEGSRKVVLATNIAETSLTIDGIKYVIDPGFCKIKSYNPRTGMESL
LINPISKASANQRAGRSGRTGPGKCFRLYTSYNYMHDLEDNTVPEIQRTNLANVVLTLKS
LGIHDLVNFDFMDPPPSEALLKALEQLFALSALNSRGELTKTGRRMAEFPLDPMLSKMIV
ASEKYKCSDEVISIASMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLNVYNSW
KETDFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVCSNASDLDAIKKAITSGFF
HHSARLQKNGSYRTVKNPQTVFVHPSSGLAQLLPRWVIYHELVLTTKEYMRQVTELKPEW
LVEIAPHYYQLKDVDDSGSKKLPKGQGRAAL
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgacaggcagctcagggattgggtctccgacaagctcatgtccctccaagga
ttcacaacgaccgtcgtcgtgcagtatgtcatcaggctagctaaggaatgctcttctact
ggtgatctcgtggggaagctcgtcgagtacgggttctcctcgtccgcagagacaagcagc
ttcgcagccgacatctacgccaaggtcccccgcagggaccgcggtatcagcaattaccag
aaacaggaaagggaggcagcaaagcttgtgaagaaacagagcacttacaagttgttggat
gatgatgatgagaatgatattgacaaccacacgtctattgacaaccacacgtcaagtttg
gcgagcacaccctctaagagtaggaaacatttcaggaggagagctgaggaccaagaagat
ttgaaggatgatgatgaaacaataacacatgattctgagagaagtgtgcgacggcgaata
gaagaggcggatgacgaagatggtgatgagacttttgatgaagaacgagaaatcataaga
gatcaacaggaaagagctcagctagagaagaatatgagagaaagagacgcagttaacact
cgaaagttgatggagcgacaattatctaaggaagaacaagaggaccttacgagacgatct
caagcaatggacaagaatgacacttcagatctgagaaatttttcaaggcaagcatacttg
caaaagcgaagggacaaaaaaattgatgagattcgggacgaaattcttgatcatgaatac
atttttcaggatgtgaaactaaccgaagcagaagaaaaggacttcagatacaagaagaag
atttatgatcatattaaggagcgtgttgagagtgcagatgatattgctgagtacaaaatg
cctgaagcttatgatatgggtgaaggtaatcaagaaaagagattctctgttgcaatgcag
cgatacaaagatcctgaggccaaagataaaatgaatccttttgctgaacaggaagcatgg
gaagaacatcaaataggaaagtctaaactgcaatttggatcgaaagataggaagcggtct
tctgatgaatatcagtatgtatttgatgatcaaattgattttgttaaatcatcggtcata
gaaggaacacagtttgaagacgattcagaccaagagaccatcgatgcaaaagatatttta
aaaagggagctccaggatgagcggaaaacccttccaatttataaattcagggatgaactg
ctcaaggctgttgatgaatatcaggttattgtcatagtgggagaaaccggctctggtaaa
acaacacaaatacctcaatatcttcatgaagctggatatactgcaagaggaaaggttgct
tgtacgcaacctcgtcgagtggcagccatgagtgttgcagcaagggtgtctcaagagatg
ggtgttaaactgggacacgaggttggttactccataaggttcgaggattgcacctcagag
aaaacaatgattaaatacatgacagatggtatgcttttgagggagtttcttggtgaacca
gatttggctggctatagtgttgtgatggtcgatgaggctcatgagcgtacactgtctact
gatatcttatttggtttggtgaaggatattgctaggtttcgtccagacctaaagttgctc
atttcaagtgcaaccctggatgcagaaaaatttagcgactactttgattcagctcctatt
ttcaagattcctgggaggcgataccctgttgaagttcattatacaaaagctccagaagca
gattacattgatgctgccattgtcactgttttacagatacatgtgacacaaccccctggt
gatatcctagtgttccttacagggcaggaagaaattgaaacagttgatgaaatccttaaa
caaagaacaaggggcttaggaacaaagattgcagaactaaacatatgccctatttatgca
aatctgcctactgaacttcaagctaagatctttgagcaaacccccgaaggttctcggaaa
gtggtcctggccactaatatagcagagacttcattgaccattgatggtataaaatatgtt
atcgatccaggtttctgtaagatcaagtcatacaacccccgtacaggaatggaatccctg
cttatcaatcctatctcaaaggcatcagcaaaccagagggcaggaagatctggacggaca
ggacctggaaaatgtttccgcctgtacacaagctataactacatgcatgatcttgaggat
aatactgttccagagattcaaagaaccaaccttgcaaatgttgtacttacacttaagagt
cttggtattcatgacttggttaattttgattttatggacccacctccttcagaggccttg
ttgaaggccctggagcaacttttcgctctcagtgcactcaacagtcgtggagagttgacg
aagactggaagacgaatggcagaatttccattagatcctatgctgtcaaagatgatagta
gcttcagagaaatataagtgttctgatgaggtcatctccattgcgtccatgttgtcgatt
ggcaattctatattttatcgtccgaaggacaaacaagttcatgctgacaatgcaaggttg
aacttccacactggcaatgtcggggaccatatagcattactcaatgtctataactcctgg
aaagaaactgacttttcaactcaatggtgttatgaaaattatatacaggtccgcagcatg
aagagggcaagagatattcgagatcaactagaaggacttctggagagagttgagattgag
gtttgttcaaatgccagtgacttggatgctattaaaaaggctataacatcaggtttcttc
caccattctgcacggttgcagaagaatggttcttatagaactgtcaagaaccctcagact
gtctttgtccaccctagttcaggattagcacagctacttcctcgatgggtaatataccat
gaattagttctcacgacaaaagagtatatgcggcaggtgacagaactaaaacctgaatgg
ctggtagaaattgctccacattactaccaattgaaagatgtggatgactctggttcgaag
aagctacccaaaggacaaggacgagctgcattatag
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