Brachypodium distachyon (stiff brome): 100834278
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Entry
100834278 CDS
T01717
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2 isoform X1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100834278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100834278
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
100834278
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
100834278
NCBI-ProteinID:
XP_014751655
UniProt:
A0A2K2CJJ7
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Position
5:27861621..27867444
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AA seq
289 aa
AA seq
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MRGSLAHVRPLSPPFVLSVNTASGTVAHTSIYFARLREDGTLLPKPSPSRKPTTSLFLLL
AAASSGDHRSPRRKRKSESSARRRKEMVSASSSSVVNVYPLANYTFGTKEPKMEKDTSVA
DRLARMKVNYMKEGMRTSVEAIMLVQEHNHPHVLLLQIGNTFCKLPGGRLKPGENEIDGL
KRKLCSKLGVNSPSFPPNWQVGECVGVWWRPNFDNVMYPYCPPHITKPKECKKLFIVHLT
EREYFAIPRKLKLRAVPLFEIYDNVQRFGPVISTIPLQLSRFQFNMVSS
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgaggggatccctagcacatgtcagacctctgtctccaccattcgtattgtcggttaac
acggcttcaggaacagtggcccacacctctatatacttcgcgcgattgagagaagacggg
acccttctccccaaacctagcccgtcccgaaagcccaccaccagcctctttcttctcctc
gccgccgcctcctccggcgaccaccggagcccgagaaggaagaggaagagcgagagctca
gcaaggcgaaggaaggagatggtgagcgcctcgtcatcgtcggtggtgaacgtgtacccg
ctcgccaactacacgttcggcaccaaggagcccaagatggagaaggacacctccgtcgcc
gaccgcctcgcgcgcatgaaggtcaactacatgaaagaaggaatgcggacaagtgttgaa
gcaatcatgctggtgcaagagcacaaccatccccacgtactgctattgcaaattgggaat
acattttgcaaacttcctggtggacggttgaagcctggagagaatgaaattgatggcctg
aagagaaagctgtgcagcaaacttggagtgaactcaccttcctttccacctaactggcag
gttggggagtgtgttggtgtctggtggaggccaaactttgacaatgtgatgtatccttac
tgccctccacatattaccaagcccaaggagtgcaagaagcttttcattgttcacctaact
gaaagggagtatttcgccattccaaggaagttgaagctacgtgccgttccactgtttgaa
atctatgacaatgttcagcggttcggacctgtcatttccactatccctctacagctgtct
aggttccagttcaacatggtgagctcgtaa
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