Brachypodium distachyon (stiff brome): 100834292
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Entry
100834292 CDS
T01717
Name
(RefSeq) flowering time control protein FY
KO
K15542
polyadenylation factor subunit 2
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100834292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100834292
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100834292
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_IFT122_1st
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML
EIF3I
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
DSE1_N
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
ASA1
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_WDR19_1st
CFAP251_N
Beta-prop_NOL10_N
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_DCAF4
PAC11
Beta-prop_WDR41
Beta-prop_SPT8
Beta-prop_WDR75_1st
eIF2A
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
NBCH_WD40
WD40_RFWD3
Tricorn_2nd
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_Vps41
WD40_like
WD_LRWD1
B-prop_COPA_B_2nd
WDR54
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
100834292
NCBI-ProteinID:
XP_003565074
UniProt:
I1HV81
LinkDB
All DBs
Position
2
Genome browser
AA seq
722 aa
AA seq
DB search
MMHQHQHQHQPPPPPPPQHPPPQAAGGGGGGGGGEFYRGPLQPPMRQLSAASSTNLPPEY
AAHSGPPQQHHHHQQQPPPQQQQQPFDAYGDNFGAKRMRKPVQRRTVDYTSSLVRYAQAR
MWQRDARDRFTLQPTAAAVLDMLPSVAYPDNPSTSFAAKFVHSSINKNRCSINCVVWTPT
GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAVRSMIWSHNENWMVTGDDGGAIKYWQS
NMNNVKVNKTAHGESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS
VDWHPTKSLLVSGGKDYLVKLWDAKSGRELRSFHGHKNIVQCVKWNQNGNWVLTASKDQI
IKLYDIRSMKELESFRGHNKDVTALAWHPFHEEYFVSGSYDGGIFHWLVGHETPQIEINN
AHDNSVWDLAWHPVGYLLSSGGNDHATRFWCRNRPGDLTRDRYNGGQLQGYGDQHPGFAG
RGFQMPEPPIPGPFASTIPGIGVAMHLDGSDHGEQRPSIPGLPPGPPPLPPGPHPSLLPS
GQHQHYQQMPQQQHSQFRPPPPNMPQLQPPGHMLAHQQGPRPPLPQLPSMPGSMPGPSPV
NPPLPPMPHPMAMQGSSNQMMPQMPQHLIGLNQGHPGSVPPSNMPQMGAFPNGMGNIQGA
SGASGMQNFPMGGMYNRPQGQMTPQGQMSTIPGLSSYQPGMGNVVLPPPPPQHPPPRGAT
PQ
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgatgcatcagcatcagcaccagcaccagccgccgccgcctcccccgccgcagcacccg
ccgccgcaggccgccggcggcggcggcggcggcggcggcggggagttctaccgcggcccg
ctgcagccgccgatgcggcagctctccgcagcgtcctccaccaacctcccgcccgagtac
gccgcccactcgggacccccgcagcagcatcaccatcaccagcagcagccgccgccccag
cagcagcagcagccgtttgacgcttatggggacaatttcggtgctaagaggatgcggaag
cccgtccagcgacgaacagtggactacacgagctcgctcgtccgttatgctcaagctcgc
atgtggcagcgggatgcaagggacagattcactctgcagccgactgcggctgctgttctg
gacatgttgccatctgttgcatacccagacaacccttcgacaagttttgctgccaaattt
gtacattcatctatcaataagaaccggtgctccataaactgtgtcgtgtggactcctaca
ggtcgtaggcttattactggatcacagagtggcgaattcaccctgtggaatggacaatct
tttaattttgaaatgattcttcaggcccatgatcaagctgtgagatcaatgatttggagt
cataatgaaaattggatggttacaggcgatgatggtggtgcaataaagtattggcaaagt
aacatgaataacgttaaggtgaacaaaactgcccatggagaatcagtccgtgacttgagc
ttttgtagaacagacctgaagttttgttcatgttctgatgacacaactgtgaaggtttgg
gactttgcaagatgccaagaagaaagatctttaactggccatggttgggatgttaaaagt
gtcgattggcatcctacgaaatctttattggtttcaggtggtaaagattatcttgtgaaa
ctctgggatgcaaaaagtggtagagagctacgctcattccatggtcataaaaacatagtg
caatgtgtaaagtggaatcagaatgggaactgggtgttgactgcctctaaggaccagatt
atcaagctatatgatattagatccatgaaagagcttgaatccttccgtgggcacaataag
gatgtaactgctttggcatggcatccattccatgaagaatactttgttagtgggagctat
gatggaggaatctttcattggttggttggccatgaaaccccacagatagaaataaataat
gcacatgacaatagtgtgtgggaccttgcctggcatccagtgggctatctactttccagt
gggggcaatgatcatgctacgagattttggtgtagaaacaggcctggcgatcttacccgt
gatagatacaacggtggacagcttcaaggttatggtgatcaacatcctggttttgccggt
cgtggattccagatgcctgaacctccaatacctggaccttttgctagtacaattcctggc
attggtgttgcaatgcatcttgatggatctgatcacggggaacagaggccatctattcca
gggcttccacctggcccgcctccgttgccaccaggtcctcatccatctcttctgcctagt
gggcagcatcaacactatcaacagatgcctcagcagcaacattctcaatttcggccacca
cctccaaacatgcctcagctgcagccaccagggcatatgcttgcacatcaacaaggacct
cgaccaccacttcctcagcttccatcgatgccaggttccatgccagggccatcaccagtg
aacccaccgctaccgccaatgccacaccccatggcaatgcaaggttcgtcgaaccagatg
atgcctcaaatgccacaacacttgattggcctgaatcaggggcatccagggtccgttcct
cccagcaatatgcctcaaatgggtgccttcccaaatggaatgggaaatattcaaggtgca
tcaggtgcttctggcatgcaaaactttcctatgggtggcatgtacaaccggcctcaggga
caaatgactccacagggacaaatgtcgaccatccctggtctaagttcttaccaaccaggg
atgggcaatgttgtccttccaccaccgccgccacagcatcccccacctcgcggagcaaca
ccacagtaa
DBGET
integrated database retrieval system
