Brachypodium distachyon (stiff brome): 100834661
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Entry
100834661 CDS
T01717
Name
(RefSeq) exosome complex component csl4
KO
K07573
exosome complex component CSL4
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100834661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100834661
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100834661
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
100834661
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
CHASE5
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
100834661
NCBI-ProteinID:
XP_003578616
UniProt:
I1ISN9
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Position
4:42553852..42556709
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AA seq
199 aa
AA seq
DB search
MAATAMEHDGGVEVVTPGELLGTSSSFVAGHGAYADGRSVRASVTGHRRIVPPSPDSPDK
RSTVEVVGHKAHGAVPQPGSVVIARVTKVMARVASADIMCVDSKAVKEKFTGMIRQQDVR
ATEIDKVDMYQSYRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAQSIAGGMLVPTSWT
EMQCELTGQIEQRKVAKVE
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atggcagccacggcgatggagcacgacggcggcgtcgaggtggtcactccgggggagctc
ctcgggacctcctcgtccttcgtagccgggcacggagcctacgccgacggccgctccgtg
cgcgcttcggtcacaggacaccgccgcatcgtgcctccctctcccgactctcccgacaag
aggtccacggtggaggtggtcgggcacaaggcccatggagctgtgccgcagccgggcagc
gtcgttattgcccgtgtgacgaaggttatggctagggtggcttctgcagatataatgtgt
gttgactcaaaggctgtcaaggaaaagttcactggcatgataaggcagcaagatgttcgt
gcaactgagattgataaggtggatatgtaccagtcatatcgacctggcgacattgttaga
gctctggttctctctcttggcgatgcaagggcatactacctttcaactgccaagaatgaa
ctcggagttgtttctgcccaaagtatagctggcggtatgctggtcccaaccagttggact
gagatgcaatgcgaattgactggccaaattgagcaaagaaaagttgcaaaagtggaatag
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