Brachypodium distachyon (stiff brome): 100834707
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Entry
100834707 CDS
T01717
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100834707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100834707
03012 Translation factors [BR:
bdi03012
]
100834707
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100834707
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100834707
Translation factors [BR:
bdi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
100834707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
DEAD
Helicase_C
R3H
HA2_N
ATPase
Ank_5
Ank_2
nSTAND3
AAA_19
AAA_22
ABC_tran
ResIII
AAA_16
AAA_7
Rad17
PhoH
AAA_23
DUF3667
Myosin_head
Motif
Other DBs
NCBI-GeneID:
100834707
NCBI-ProteinID:
XP_003567152
LinkDB
All DBs
Position
2:50467210..50477232
Genome browser
AA seq
1195 aa
AA seq
DB search
MGRKGRKGNDGGLGGLSEETLVRVTTVLEEFRASDAQVHTFEANISKQERAAIHEICRKM
GMISKSKGYAERRCLSVYKRKQTQGPDKEEGPSKLGFSEEARNVLQDLFTHYPPTDAELN
GEAVKNSSDKAAKIQWKTDSAFCRPVMHKHDIAKKVEILASKINESRQLRKIVEDRSKLP
ISSFKDHISSTLENNQVVLISGETGCGKTTQVPQYILDHVWGKGESCKIICTQPRRISAI
SVAERISAERGEVVGDTVGYKIRLESKGGKNSSIMFCTNGVLLRLLIGRVTNMPKAKNPK
RSFDDAVMGITHIIVDEIHERDRFSDFMLAILRDLLPVYPHLHLVLMSATIDAERFSQYF
NGCPIIQVPGHTYPVKIFYLEDVLSILQSVGDNHLNPATDDLEQDSILTDDYRSSMDESI
SMALANDEFDPLIELISVEQSPEIFNYRHSESGVTPLMVFAGKGQIGDVCMLLSFGVDCS
ARDHDGKSALDWAQQENQQQVYEVIKKHMDCGSVKSPQENELLNRYLTTINPEHIDTVLI
ERLLRKICIDSNEGAVLVFLPGWEDINQTRERLFASPLFQDSSKFLILSLHSMIPSVEQK
KVFKSPPVGVRKIILSTNIAETAVTIDDVVFVIDSGKMKEKSYDPYNNVSTLHTSWVSRA
SARQREGRAGRCQPGTCYHLYSGFRAASLPEYQIPEIKRMPIEELCLQVKLLDPNCRIAD
FLKKTLDPPIPETVKNAITVLQDLGALTQDEQLTDLGEKLGSLPVHPSTSKMLLFGILMN
CLDPALTLACAADYRDPFVLPMAPDERKKAAAAKVELASLYGGFSDQLAVVAAFDCWICA
KDRGQEALFCSKYFVAANTMNMLSNMRKQLHSELSQRGFLPADASACSLNAKVPGIISAV
LVAGAYPMVGRLLPPRRNCKRAVVETASGAKVRLHPHSCNFNLSFNKSYGNPLMIYDEIT
RGDGGMYIKNCSVVGSYPLVLLATEMAVAPPDDSDEEEGSSEDEAEKNTSGQQNEEIMSL
PDNTVSVIIDRWLRFDATALDIAQIYCLRERLASAILFKVKHPQDVLPPALGATMYAVAC
ILSYDGLPGMVESADLSTNRGSNQSSTEASRFTQGRRASYIPPGGFLMSLLSDIPPNAPQ
FRKSSHHPGGASGHIRPSRPSAGRFNQSKQHPRRSSSGQGSSAPESFKRQRDGAR
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcaaggggaggaaggggaacgatggcggcctcggcggcttgagcgaagagacg
ctggtgcgcgtcaccacggtgctcgaggagtttcgcgcctccgacgcccaggtgcacaca
ttcgaagctaatatatccaaacaagagagggctgcaatccatgagatctgcagaaaaatg
ggcatgatatccaaaagtaaagggtacgcggaaaggagatgcctttctgtttataaaagg
aaacaaacgcaggggcctgataaagaagaaggccctagcaaactcgggttttctgaagaa
gcaagaaatgttttgcaagatctgttcacacattatcctcctactgatgccgaattaaat
ggggaagctgttaagaattctagtgataaggcagcgaaaatccaatggaagacagatagt
gccttttgcaggccagttatgcacaagcacgatatagctaagaaggttgagatacttgcg
tcaaaaataaatgaatccagacagttgaggaagatcgttgaagacagatccaaacttccg
atttcatccttcaaggatcatatttcttctactctggagaacaaccaggtggttcttatt
tctggagaaacaggctgtggtaaaactactcaggttcctcaatatatcttggatcatgtc
tggggcaagggtgaatcatgtaagatcatatgtactcaaccgcgacggatatcagctata
tcagttgccgagcgaatctctgctgaaagaggagaggttgttggcgacacagttgggtac
aagatacgtttggagtcaaaaggaggaaagaattcgtcaataatgttctgtacaaatggt
gttcttttgaggctgttgataggcagggtaactaacatgccaaaagcaaaaaatcctaag
cgctcatttgacgatgcagttatggggataacacacatcattgtggatgaaattcatgaa
agggataggttttccgatttcatgcttgctatcctgagagatttgctgccggtgtatcct
catcttcatttggtgctcatgagtgcaacgatcgatgctgagagattttcacaatatttc
aatgggtgcccgattattcaagtcccaggccatacctatcctgtcaaaattttctatttg
gaggatgtgctttctattctgcaatctgtaggtgataatcaccttaatcctgcaaccgat
gatctggaacaggacagtatattaacagatgattacagaagctcaatggatgaatcaatc
agcatggctttggccaatgatgaatttgacccgctcattgagcttatttctgtagagcag
agcccagaaatcttcaactaccggcattcagaatctggggtgacacctttgatggttttt
gccggaaagggtcagattggggatgtctgtatgcttctatcatttggtgtggattgttct
gcacgtgaccatgatggaaaatctgccttagattgggcacagcaagagaatcagcaacaa
gtctatgaagtaattaaaaaacacatggattgtggttcagtaaaatcacctcaggagaat
gagctgcttaacagatacttaacaactatcaatccggagcacattgatactgtgctgata
gaacgcttgcttagaaaaatatgtattgattccaatgaaggagctgttctagtgttcctt
cctggttgggaagatataaatcaaacacgggaaaggttatttgcttctcccttatttcag
gattcgtcaaaatttcttatactgtccctccattccatgatcccatctgtagagcagaaa
aaggttttcaaaagtccaccagtaggggttcggaaaattattctctcaaccaacatagca
gagactgcagtaacaattgatgatgttgtatttgtcatagatagtgggaaaatgaaagag
aaaagttatgacccatacaacaatgtgtccacgcttcatacttcctgggtttctcgagct
agtgcaagacagcgtgaagggcgtgctggtcgttgtcagccaggaacttgctaccatctt
tactctggatttcgagcagcttcactgccagaataccaaattcctgaaattaagaggatg
cctattgaggaactatgtttgcaggtcaaactgcttgatccaaactgcagaatagcagac
tttttaaagaagacgttggatcctccgattccagaaactgtaaaaaatgctataactgtg
cttcaggatcttggtgctttaacacaagatgaacagttgacagatttgggtgaaaagtta
ggttctcttcctgtccatccatccactagcaagatgctcctgtttggtatattgatgaat
tgccttgatcctgcattgacattggcatgtgcagccgattatagagatcctttcgtcctt
ccaatggccccggatgaaagaaaaaaggctgctgcggccaaagttgagcttgcttcatta
tatggtgggtttagtgaccagcttgctgttgtagcagcatttgattgttggatatgtgcg
aaagataggggtcaagaagctttgttttgttcaaaatattttgtcgctgcaaacaccatg
aatatgctatcaaatatgaggaaacaacttcatagtgaactatctcaaagaggatttctt
cctgccgatgcgtctgcctgtagcttaaatgctaaagttccaggtatcattagcgccgtc
cttgtggctggtgcttacccaatggtaggacgattgctcccacctcgcaggaattgtaaa
agggctgttgttgaaacagcaagtggtgccaaagttcgactacatccacattcttgcaac
tttaacttgtcatttaacaagtcttatgggaatcctctaatgatatatgatgaaatcact
cgaggtgatggtgggatgtacataaaaaactgttcagttgttggatcatatccattagtt
cttcttgcaacggaaatggctgttgctccgcctgatgacagtgatgaagaggagggttcc
agtgaggatgaagctgaaaaaaacacttcgggacaacaaaatgaagagattatgtctttg
cccgataacactgtttcagttattattgatcggtggctccgatttgatgctacagctctg
gatatagcccaaatatattgcctaagagaacgcctagcatctgctattcttttcaaagtc
aaacatccacaggatgttctcccacctgctcttggagcgacaatgtatgctgttgcatgt
attctatcatatgatggcctgcctggtatggttgaatctgctgatttgtcaacaaaccgt
ggttcaaatcagagttcaacagaagctagcagattcactcagggtcggagagctagttat
attccacctggaggtttccttatgtcattgctatcggacataccgcctaatgcacctcag
tttcggaagtcttcccaccatccagggggtgcttcagggcatattcggccatcgaggccc
tctgctggtagatttaatcaatctaaacagcatcctcgacgcagcagttctggacaaggg
agttcagcaccagagtctttcaaaagacagcgtgatggtgcaaggtga
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