Brachypodium distachyon (stiff brome): 100834927
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Entry
100834927 CDS
T01717
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi00040
Pentose and glucuronate interconversions
bdi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
100834927
Enzymes [BR:
bdi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
100834927
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
100834927
NCBI-ProteinID:
XP_003571838
UniProt:
I1I4F1
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All DBs
Position
3:complement(28889940..28897432)
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AA seq
479 aa
AA seq
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MAGAPKSTRIIFLLPLLLLGATASSHPLLNASLPEPAAVVADFHSKVATSRRRMQESGGG
CMTGNPIDDCWRCAGTDWRQDRQRLADCGIGFGRNALGGKGGPLYVVTDSSDRDPVNPSP
GTLRHAVIQEGPLWIVFAADMTIRLNEELLVNSYKTIDGRGANVHVGAGGACITLQYVSN
VIIHNIHVHDCVPAGNANVRSSPTHSGWRTRSDGDGISLYSARDVWVDHCALSRCADGLV
DAIMGSTAITVSNSYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGVQLVQRMPRCRRG
YFHIVNNDYTAWEMYAIGGSASPTINSQGNRYIAPANPNAKEVTKRVDTAEGQWNGWNWR
TEGDMMVNGAFFVPSGEGMEDIYQKASSIDPKSSALVDQLTIGAGVLGGPRDNGEAAAYA
GVNYAGVSTGGGASGGRGNGYGVLGMVYANGGDWISCRSHLIPSLASLLVFALVCLHPL
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcccccaaatccacccgcattatcttcctcctccccctcctgctgctcggg
gcaacggcctcctcccatcccctcctcaacgcctctctcccggaacccgccgccgtcgtc
gccgacttccacagcaaggtggcgacgtcgcgacggcggatgcaggagtccggcggcggg
tgcatgacaggcaacccaatcgacgactgctggcgttgcgcgggcacggactggcgccag
gaccggcagcggctggccgactgcggcatcgggtttggccgcaacgcgctgggcggcaaa
ggggggcccttgtacgtggtgacagactcctcggaccgcgaccccgtgaacccgtcccct
ggcacgctccgccacgccgtgatccaggaagggcccctgtggatcgtcttcgccgccgac
atgaccatccggctcaacgaggagctcctggtcaactcctacaagaccatcgacggtcgt
ggcgccaacgtccacgtcggggcgggcggcgcctgcatcacgctgcagtacgtgtccaac
gtcatcatccacaacatccacgtgcacgactgcgtgccggcggggaacgccaacgtccgg
tcgtcgccgacgcacagcgggtggcggacccggtcggacggcgacggcatctcgctctac
tcggcccgggacgtgtgggtcgaccactgcgcgctgtcccggtgcgcggacgggctggtg
gacgccatcatgggatccacggccatcaccgtctccaactcctacttctcgcaccacaac
gaggtgatgttgctgggccacagcgacgactacctgccggactccgggatgcaggtcacc
atcgcattcaaccacttcggggtccagctcgtgcagcggatgccccgatgccgccgcggc
tacttccacatcgtcaacaacgactacaccgcctgggagatgtacgccatcggcggcagc
gccagccccaccatcaactcccagggcaaccgctacatcgcccccgccaaccccaacgcc
aaggaggtgacgaagcgggtggacacggcggaagggcagtggaacgggtggaactggcgg
acggagggggacatgatggtgaacggcgccttcttcgtgccctcgggtgaaggcatggag
gacatctaccagaaggcctccagcatagaccccaagtcctccgcgctcgtcgaccagctc
accatcggcgccggcgtcctcggcggccctagggacaacggggaggcggcggcgtacgcc
ggggtcaactacgccggagtgagcaccggcggtggtgcctctggaggcagaggcaacggg
tatggcgtcctcggaatggtctatgccaacggcggcgattggatcagctgccgatctcac
ttgataccatcattggcctctctgctggtctttgctctagtatgcttgcacccattgtaa
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