Brachypodium distachyon (stiff brome): 100834961
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Entry
100834961 CDS
T01717
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100834961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100834961
03041 Spliceosome [BR:
bdi03041
]
100834961
03009 Ribosome biogenesis [BR:
bdi03009
]
100834961
03016 Transfer RNA biogenesis [BR:
bdi03016
]
100834961
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100834961
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100834961
Spliceosome [BR:
bdi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100834961
Complex C
U4/U6.U5 tri-SnRNP related factors
100834961
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
Pre-60S particles
Helicases
100834961
Transfer RNA biogenesis [BR:
bdi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100834961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
100834961
NCBI-ProteinID:
XP_003577781
UniProt:
I1IN25
LinkDB
All DBs
Position
4:29164025..29171856
Genome browser
AA seq
1005 aa
AA seq
DB search
MEEVENSSKRKASELDLEDDSAAAAVPDEQPPRPDSAAKRPNLARSCIHEVAVPTGYDLS
MDEAVHGTLSNPAFNGEMAKTYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYA
IAMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRA
MLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPTAIKMVFLSATMSNATEFAE
WICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQP
SQQDGRNGGGPKASGRIAKGGKASGTSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMS
MSKLDFNTEEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPLIKE
LVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSGRAG
RRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEH
VIRNSFHQFQYEKALPEVVQKITRLENEATLLDSSGENDLGEYHKLGLDISELEKKIMSE
MIRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPASSTLPPALSASRSNSYIVDT
LLHCSSSSSENGSRSKPCPPRPGEKGEMHVVPVPLPLVSGLSSVRINIPPDLRPPEARQN
ILFAVQELGKRYPQGLPKLHPITDMGIEEPELVDLVHKLEDLEQKLCSHPLHKSDQNEQQ
LSWYQRKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDGDGVLQLKGRAAC
LIDTGDELLITELMFNGTFNDLDHHQVASVVSCFVPCEKSNEQIRLRNELSKPMMQLQEA
ARKIAEVQRECKLDVNVEEYVESTCKPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLV
RRLDEFLNQLKAAAEAVGEVNLENKFGSASESLRRGIMFANSLYL
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggtggagaattccagcaagcgtaaagcgtccgagctggatttggaggacgat
tctgccgctgctgctgttccggacgagcagccgccgcggcccgactcggctgccaagcgc
cctaacctcgcccggtcgtgcatccatgaggtcgctgtccctaccggctacgatttgtcc
atggatgaggctgtacatgggaccctttccaaccctgcatttaatggggagatggccaag
acgtacccatttcagctcgaccctttccagagtgtttcgatcgcgtgcttggagcggaat
gaatctgtcttggtctcagctcacacctccgcggggaagacggccatcgctgagtacgcc
attgcaatgtcgttcagagacaagcagagggttatatacacctctccgttgaaggccctg
agcaatcagaagtacagggagcttagtcaggagttttctgatgtcggtttgatgaccggt
gatgtcacgctccagccaaatgctacttgcctggtcatgactacagaaatcctgagggcg
atgctttataggggctctgaggtgatcaaggaagtcggttgggttatatttgatgagatc
cactacatgaaggatcgtgagagaggcgttgtgtgggaagagagtatagttttcctgccc
actgcaatcaagatggtctttctttctgctactatgtcaaatgcaacagagtttgcggag
tggatttgcaacctgcacaagcagccttgtcacgtggtgtacacagacttcaggccgaca
ccgttacagcactacgtattcccgataggcgggtctggtctctatcttgtagtagatgaa
aatggtcagttcagggaggataattttctaaagctgcaagacacatttgcaaagcaacct
agtcaacaagatggtaggaatggtggtggacctaaagccagtggtcgaatagcaaaaggt
ggaaaggcatctggaacttctgacatatacaggattgtcaagatgattatggagcgcaag
tttcaaccagtcataattttcagctttagtagaagagaatgtgaacatcatgctatgtcg
atgtcaaaacttgatttcaacacggaagaagaaaaggataacatcgagcaggttttccgt
agtgctattttctgtttaagcgaggaagatagaggtttgcctgctatagagttgatgttg
cctcttcttaaacgaggtattgcagtacaccattcaggactgcttccattaattaaggag
ctggtagaactgctcttccaagaaggtcttgtgaaagctctctttgctactgaaacgttt
gccatggggctgaacatgcctgcaaaaacagttgtcttcacttctgttaaaaaatgggat
ggtgatagtaaccgttatattgcttccggagaatatattcagatgagtggaagagctggt
cgacgtggcaaggatgagcgtggcatttgtgttataatgatagatgagaagatggaaatg
agtgttattaaagatatggtgttaggtaaaccagcacctcttatcagtactttccgactg
agctattacactattctaaatttactgagtcgcgcggagggccaatttactgccgagcat
gtgatccggaattcattccatcagttccaatacgaaaaggcattaccagaagtggttcag
aagattacaaggttggaaaatgaagctactttgctggactcttctggagagaatgatctg
ggtgaatatcacaaattagggcttgatatatctgaacttgaaaagaaaatcatgtctgag
atgatcagaccagagagagctttgttatatttggttcctggaaggctggtaaaagtgagg
gatggttcaacagactggggatggggtgtggttgtaaatgtggtgaagaaacctccagca
tctagtactctccccccagcattaagtgcatctcgtagtaatagctatatagtggacacc
ttgcttcactgttcttctagttcaagcgagaatggatcacgttcaaagccatgcccacct
cgcccaggggagaagggagaaatgcatgtggtgcctgtaccattaccgttagtatctggt
ctaagcagcgttagaatcaacattcctcctgatctacgaccacctgaagcaagacaaaat
atactttttgcagttcaagaactgggaaagcgttatccccaagggcttccgaagctacat
ccaattacggacatgggtattgaagaacctgaattagttgacttggttcataaacttgag
gatctcgagcagaaactatgttctcatccacttcataagtctgatcaaaatgagcagcaa
ctatcatggtaccaaagaaaagctgagctaaatcatgaaattcaacaactgaagtcaaag
atgcgtgattcacagctacaaaaatttagggatgaacttaagaaccggtctcgcgttctc
aagatgcttggtcacattgacggggatggtgttcttcagttaaagggacgtgctgcctgt
ttaatagacacaggggatgagctgcttatcactgaacttatgtttaatggtacatttaat
gatcttgatcatcatcaagttgcttcagttgttagctgctttgtaccatgtgagaagtca
aatgagcaaatacgcctgagaaatgagctgtctaagccaatgatgcaactgcaggaggct
gcaagaaaaatagctgaggtacaacgagaatgcaaattggacgtaaatgtggaggagtac
gttgaatcaacttgtaaaccctacctgatggacgtcatatactgctggtcaaagggcgcc
acctttggagaagtgatagaaatgactgacatttttgaaggaagcatcataaggcttgtg
aggagactggatgaatttctgaatcagctaaaagctgccgctgaagctgttggggaggtc
aaccttgagaacaagtttggatcggcgagcgagagcttacgccggggtatcatgtttgcc
aactcgttgtatctctga
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