Brachypodium distachyon (stiff brome): 100835235
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Entry
100835235 CDS
T01717
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X2
KO
K10779
transcriptional regulator ATRX
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bdi03000
]
100835235
03036 Chromosome and associated proteins [BR:
bdi03036
]
100835235
Transcription factors [BR:
bdi03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
100835235
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100835235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ADD_ATRX
YlbD_coat
Motif
Other DBs
NCBI-GeneID:
100835235
NCBI-ProteinID:
XP_003571839
UniProt:
I1I4F8
LinkDB
All DBs
Position
3:28936559..28950352
Genome browser
AA seq
1502 aa
AA seq
DB search
MDGNGKLSVDELKNMEAGHSNGQPGVDIIIIEPERDENKVRGETNVGEGPFEDNREHKCE
ETDNGVHEEASTSTDDDSDSDFYFLRESENGRTSESDAEENGIEVPLPEEEVEELVAEFL
DVESKAAKAQESLEKESLEKIEAEVRLELSERLQGDVLELAVSTEMEQFKNEWSTELDDL
EIHSAVLLEQLDAAGIELPSLYKSIESQVPNVCETEAWKNRTHWVGSQVPEEANQSIRKA
DEYLQSCRPVRRKHGKLLEEGAGGFLAGKVPIGDDGSVQCHEKSWSSFNELIKSKECAES
SFGSDNWASVYLASTPQEAAALGLQFPGVDEVEEIAEVEGDVDVIKGFDEIELSEEQRRK
YKKVREEDDAKTIRRLRRQMKKRTRSCCKENFGLASSSNGFSELPPLSDNGVLGSSSGLL
SSEKHKSDKNEVSGEPLKRAREDDFELDHKRPKTVIVESDDDMLINSKPALGNQVSDSSS
AEVKKVVDIIDLDLLPSESPNFGDKALPKVFKCTVCTEMLNARDVHRHPVLDVTICGSCR
FLVIEKNRLEGPVSGGYCTWCVQCEQLQSCSSCRMLFCTNCLSKNFGEECLSKAKVAGWQ
CCCCQPRQLEHLISECDKALSGVESSDLESDNTSGNESDGPVSKHKRKKRIRRIIDDTEL
GEETKRKIAMEKARQEHLKSMHEQSASKLSRSNIVTFSGVLSEVSLQDAGDGHIVNVARE
EDEEPVRIPSSVSSKLKPHQVSGIRFMWENVIQSVRTVKSGDKGFGCILAHNMGLGKTFQ
VITFLYVVMRCVQLGFRTALIVTPVNVLHNWRKEFTKWRPDELKSLHVFMLEDVARVKRL
QLLNKWRAKGGVLLIGYSSFRNLSLGRHAREKYTADEISNALQCGPDILVCDEAHMIKNR
RADITHALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENG
QHTNSTSDDVKIMNQRSHILYEQLKGFVQRMDMNVVKNDLPPKKVFVITVKLSQLQRKLY
RRFLDVHGFSSGGASEKPLQRSGFFAKYQKLAQIWNHPGLLQMAKEQRGIVRREDAVENF
LTDESSSDDNPNIENQLPDREKQKSKTDQQSKKSDFVNEESNWWENLLDANTYMEADYSG
KMVLLLDILSTCYELGEKVLVFSQNLTTLDLVEFYLSKLQIKGKERKFWKQGKDWYRLDG
STPSSERQNLVERFNEPANTRVKCTLISTRAGSLGINLHAANRVVLLDGSWNPTHDLQAI
YRVWRYGQTKPVYAYRLMAYGTMEEKIYKRQVTKEGLAARVVDRQQVSRTISREEMLHLF
EFGDEESLDQCCNGSTIIDHTAVGTEKLSTSSSKTTELPVDKLMLNLLSDHSRWIAGYHE
HEALLQENEDERLTKEEQDMAWSSFKKAQQLEAVPRRSHDPERKPNVIALPTQTSLVPPK
VTSRSRQPQQPKTNSNQKKCTNLTHLLTLRSHGTKAGCTTSCTECGQDISWETLNRDGGR
LR
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atggatgggaatggaaaattatcagttgatgagttaaaaaatatggaagctggccactca
aatggacaaccgggagttgatatcataataattgaacctgaaagggatgaaaataaagtt
aggggagaaactaacgtgggagaaggcccgtttgaggacaacagggagcacaaatgtgag
gaaacggacaatggtgtgcatgaagaagcgtccactagtacagatgatgattcagatagt
gatttttattttcttcgggaatcagagaacggacgaacttcagagtctgatgctgaggag
aacggcattgaggtgcctctacctgaggaagaagttgaagaattggtcgctgaattcctt
gacgttgagagcaaagcagctaaagcgcaagaatcacttgaaaaagagtccctggaaaaa
attgaagctgaagtaaggttggaattatctgagaggctccaaggagatgtgttggagtta
gctgtgtcaactgagatggagcaattcaagaatgaatggtcaactgaacttgatgatttg
gagattcacagtgctgttctgttggaacaacttgatgctgctggcattgaacttcccagc
ctttataagtcaatagaaagtcaagtcccaaatgtttgtgaaactgaagcatggaaaaac
aggactcattgggttggttctcaagtgcctgaagaagcaaatcaatcaatcagaaaagct
gatgaatacctccagtcttgtagacctgtaaggagaaagcatggtaagctgctggaggaa
ggtgctggtggctttcttgccggaaaagttcctattggtgatgatggttctgtacagtgt
catgagaaaagttggagttcattcaatgaacttattaaatcaaaggagtgtgccgaaagt
tcttttggcagtgataactgggcatcagtttacctggccagtaccccccaggaagctgct
gccttaggtctccaatttccaggggttgatgaggtggaagagatagcagaagtcgaaggt
gatgttgatgtcataaaaggctttgatgaaatagagctttctgaagaacagagaagaaaa
tacaaaaaggtaagagaagaagatgatgcaaaaacaataagacgcttgcggcgccaaatg
aaaaaaaggacaagaagctgttgcaaggagaactttggtttggcctcgtcatcaaatgga
ttcagtgagttgcctccgttatccgataatggtgttttgggttccagcagtggccttctt
tcatctgaaaaacacaaaagtgataaaaatgaagtttctggtgagccgctgaagcgcgca
cgcgaagatgattttgagcttgaccacaagaggccaaaaactgtaatagtagaaagtgat
gatgacatgctgatcaatagtaagccagctttaggtaaccaggttagtgacagtagttca
gcagaagttaaaaaggtggttgacattattgatcttgatctcttaccatcagaaagccct
aacttcggtgataaggctttacctaaggttttcaagtgtacagtttgcaccgaaatgttg
aatgcccgtgatgtgcatcgccacccagtactggatgttactatttgcggatcttgcaga
tttctggtgatagagaagaatcgccttgagggtcctgtatctggtggttattgcacctgg
tgtgttcaatgtgaacaactccaaagttgcagttcctgcaggatgcttttttgtactaat
tgcttgtcaaagaattttggtgaagaatgcctgtcaaaagctaaagtcgctggctggcag
tgttgttgctgccaacccagacaactggaacacttgatttctgaatgtgataaggccctg
agtggtgttgaatcttctgatcttgagagtgacaacacttctggaaatgaaagcgatggt
cctgttagcaagcacaaaaggaaaaagaggataagaagaatcattgatgatacagaactt
ggggaggaaacaaagcgtaaaattgcaatggagaaggctaggcaagaacatttgaagtcc
atgcatgagcagtctgccagcaagttaagcagaagcaacattgtaactttctctggagtt
ctatcagaagtctctctacaggatgctggcgatggccatattgtcaatgtagctagggag
gaagatgaggaacctgttagaattcctagcagtgtatcttctaaactgaagcctcaccag
gtatcaggaataagatttatgtgggaaaatgttatccagtctgttagaacagtcaaatcc
ggggataaaggttttgggtgcattttggcacataacatggggctcgggaaaacttttcag
gttattacattcttgtacgtggttatgagatgtgtccagttgggattccgcaccgcactt
atagttacccctgttaatgttctgcataactggagaaaagagttcaccaagtggcgtcca
gacgaactaaagagtcttcatgtgtttatgctggaagatgttgcaagggtaaaaaggcta
caattactaaacaagtggcgagcaaagggcggagtgcttctcattggttattcatcattt
agaaacttatctcttggaaggcatgcgagagaaaaatataccgcagatgagatttctaat
gctttgcagtgtgggccagatattcttgtatgtgatgaagcacatatgataaagaatagg
agagctgacattacacatgctctaaaacaagtaaggacacaaagaagaattgcattaact
ggatcgccgctacagaataacttgatggaatattactgtatggttgattttgtcagggaa
gggtttcttggaagcagtcatgaatttcgcaacaggttccagaaccccattgaaaatggg
cagcacacaaattctacatcagatgatgtcaagatcatgaaccaacggtcacacattttg
tatgaacagctgaaaggttttgtccagcggatggacatgaatgtggtgaagaatgatcta
ccaccaaagaaggtttttgtcattactgtaaagctctctcaactacaaagaaagttatac
agaagattcttggatgtacacggtttctcaagtggtggtgcttcagaaaaacctcttcag
cgcagtggcttctttgccaagtaccaaaaattagcccagatatggaaccatcctggtctt
ctccagatggctaaagaacagagagggattgtgcgcagagaagatgctgtcgagaacttt
ctgacggatgagagttctagtgatgacaatcctaatattgaaaatcaattgccagacaga
gagaaacagaagagtaaaactgatcagcagtccaagaaaagcgactttgtgaacgaggaa
agtaattggtgggagaaccttctagatgctaatacgtatatggaagctgattacagtggc
aaaatggtcttgctccttgatatactgtcaacttgttatgaattgggtgaaaaggtatta
gtgttcagccagaacttgaccactctggatttggtggagttttatctctctaagttgcaa
atcaaaggaaaagaacgtaaattttggaagcagggcaaggactggtacaggcttgatggg
agcactccatcttccgagcgacagaatcttgtggagaggtttaatgaacctgcaaataca
agagtgaaatgcacattgatatcgactcgagctgggtcactgggtatcaaccttcatgca
gcaaaccgtgtggtcctcctggatggttcatggaatccaacacatgatttgcaagccatt
tatcgggtttggaggtatggccagaccaaacctgtgtatgcttaccgcttaatggcatat
ggaactatggaagagaaaatatataagcggcaggtgacgaaagaagggctcgcagcaagg
gtggtggatagacagcaagtgtctagaacaatctccagagaagagatgttgcatcttttt
gaatttggtgatgaggaatcattggaccagtgttgtaatggttctacaataattgatcac
actgccgttggaacggagaagctgtctacgtccagcagtaaaaccactgaactacctgtt
gacaagctcatgctgaacctacttagtgatcactctaggtggattgcaggttatcacgaa
catgaagctcttctgcaagaaaatgaagatgaaaggcttactaaggaagaacaagatatg
gcctggtcaagtttcaaaaaagcgcagcagttggaagccgtgccaaggagaagtcatgat
cctgagagaaagccaaatgtgatcgctcttccaacacagaccagccttgtgccccccaaa
gttacttcaagaagtcggcagccacagcaaccaaagactaactcgaaccagaagaaatgc
accaatctaacccacttgctgactctaagaagtcacggcaccaaagcgggatgcacgaca
agctgtacggaatgtggccaagacattagctgggaaaccctaaacagagatggtggtagg
ttaaggtga
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integrated database retrieval system
