Brachypodium distachyon (stiff brome): 100835393
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Entry
100835393 CDS
T01717
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100835393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100835393
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100835393
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
NAP
SGT1
COG3_N
Motif
Other DBs
NCBI-GeneID:
100835393
NCBI-ProteinID:
XP_003564647
UniProt:
A0A0Q3N202
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All DBs
Position
2:complement(53802884..53812636)
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AA seq
729 aa
AA seq
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MASSFAFGTSGAAGSTASPFSFTTAPSAFSSSPAPAFGSSPAPAFGSSPFSSSAAASSTP
TFGSSLFGSAPASAAAPTTASSPSPFGFGSTGFGIGQPTSSSASTLFGAPAASAAATTPS
LFGSATTNPSPFGAPAASATATTPGLFGATSSTAVTPGLFGATPAAATTPSIFGATSSAA
STPSLFSTPATGFGFGSSASGATTATTAAPTPSFGFGLNSAAAPSSTAATSAPAPGFGPP
TGSALFGSTPAAPLFGNIAASSPATTATTAPSVGFSLPAATTASAPSFGFTPSSGSTTTG
STTPSLFSSAPSASAFSIPNNASAAPTTPASAPTSGFSLATSQAAPAPSLFSNTGAAASS
SASSLNFPFGASVATPTPTFASVSATSASTVPPTTVASTTSGSLFSVPASSSSSSGFSFT
VPPSSSSSAAVTTTITSPSTSAATTTAPSTTTSAFPSFSLQASTPASTSTLATQSALFGA
PATAASTSATSTTTSQATSSALQASSTGPTTTAITPAASQAPKLPSEIVGKCVEEIIRDW
NNGLQDRTAKFRKHATAISEWDRRILQNRNVLIRLEADVAKVVETQTSLERQLELIETHQ
REVDKALQSMEEEAEQIFQDERVLLREDEAASARDTMYEQAEIVENELQHMTEQVKSIIQ
TLNSTQGGELEATDSMTPFDVAVRILDNQLRSLMWIDEKANEFSNRIQRLPNNSAAAERD
SGIPRFWLN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctccttcgcgttcggcacttccggcgcagccggatccaccgcctcccctttc
tccttcaccaccgccccatccgccttctcctcttcccccgcccccgccttcggttcctcc
cctgctccggcgttcggatcctctccattctcctcctccgccgccgcttcctctactccc
acttttggttcatccctcttcggatccgcccccgcctctgcggccgctccgaccaccgct
tcctctccatccccattcggcttcgggtccactggcttcgggattggtcagcccacctcg
tcgtccgcctcaaccctcttcggcgcacccgccgcctccgccgcggcgaccactcctagc
ctattcggctccgctacaaccaatcccagccccttcggcgcaccagccgcctcagctacg
gcgactaccccgggcctatttggcgcgacctcctccaccgcggtcacgccaggtctcttc
ggcgcgacccccgccgccgccactacccccagtatattcggcgccacctcttccgctgcg
tccacgccaagccttttctctacacctgccacgggcttcggatttggctcatccgcgtca
ggcgccaccacggccacgaccgccgccccgacgccatcattcggcttcggtctcaacagc
gcggctgctccatctagtaccgccgctacctcggcaccggctccagggtttgggcccccc
accggttcggccttattcggatccacccccgctgcgccgctcttcggcaacatcgccgcc
tcgtctccagcaaccactgctacaaccgcgccatccgttgggttttcattaccggcagca
actaccgcctctgcaccgtcgttcggcttcacgccatcatcaggaagcacgacgacgggt
agcaccaccccttcattattctcgtctgctccctcagcctctgcattctcgatccctaac
aatgcatcggctgctcctaccacgccggcgtccgcccccaccagtgggttctccttggcc
acttcacaggcggcacctgctccctcattgttctctaataccggtgcagcagcaagctcc
tcagcaagctctcttaactttccattcggtgcatctgttgctactcccacgccgacattt
gcttctgtgtctgcaacgagtgcatccaccgtgccaccaactactgttgcctccacaaca
tcgggatcattgttctcggtgccagcatcatcttcttcctctagcggtttcagctttaca
gtaccaccatcatcttcatcatcagcagcagttaccaccactatcacaagtccgtcaaca
tctgcagccacaaccacagctccttcaaccacaacatctgcgtttcctagttttagcctg
caagcaagtacaccagcttctacctcaactttggcaactcagtcagcactgtttggtgct
cctgctacagctgcaagtacttcagccaccagcaccacaacaagtcaggcgacttcctca
gctcttcaagctagcagcactggacctactactactgctatcactccagcagcatctcag
gctcctaagcttccatcagaaattgttggtaaatgtgttgaggagattattcgggactgg
aacaatggtcttcaagaccgtactgcaaagttccggaagcatgccactgccatatctgaa
tgggacaggagaattctgcaaaataggaatgttcttataaggcttgaggctgacgtggct
aaggttgttgagacacaaacaagcttggagaggcaacttgagttgatagaaactcatcaa
agagaggtggacaaggctctacagagcatggaggaggaagccgaacagatattccaggat
gaacgggtgttacttcgtgaagatgaggctgcttctgcaagagatacaatgtacgagcaa
gctgaaattgtggagaatgaattgcaacatatgacagaacaagtaaaatccatcattcag
accttgaattctactcagggtggtgagctagaggctacagatagcatgacaccatttgat
gttgctgtccggatactggataatcaactgcgctctctaatgtggattgacgagaaggcc
aacgaattctcaaacagaatacagagactgcctaacaatagtgctgcagctgagcgcgac
tcaggaatcccaaggttttggttaaactga
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