Brachypodium distachyon (stiff brome): 100835731
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Entry
100835731 CDS
T01717
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100835731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100835731
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100835731
Spliceosome [BR:
bdi03041
]
Complex C
Other components
Step II factors
100835731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
S1
AAA_22
AAA_19
AAA_16
AAA_30
nSTAND3
TsaE
ABC_tran
Cas3-like_C_2
Sigma54_activ_2
PhoH
Flavi_DEAD
T2SSE
Mago_nashi
ATPase
Motif
Other DBs
NCBI-GeneID:
100835731
NCBI-ProteinID:
XP_003571712
UniProt:
I1I3F3
LinkDB
All DBs
Position
3:21921862..21925509
Genome browser
AA seq
1054 aa
AA seq
DB search
MASEGIRRLTQLSLVSKVCSELEAHLGNGERDLAEFIVHLGRASPSVADLDAKLKAHGCE
VPDYLARTLHTVIHAIPADPSAPQNPSSSTRSFGDKEGEEEEKDGDPELYQVFHGRVIRV
VDTGCFVRLDGAGGREGFVHVSRLPGGCVSVKRGQEVFVKVISVQWGNLEFSMRDVDQDT
GRELPPMLTDVPKANPKPGRAGASGKNGIGLSGIVIPEEHGAGSARRRPVRRMSSPERWE
LKQLLASGVMKDHPLFDQDDENIHYQEEEVEEELEIELNEDEPAFLCGQGRSLIELSPVR
ISNNPEGSLSRAASLQTALVKERRDIRSQEHRALLDSIPKDLNRPWEDPVPDAGGRYLAH
ELRGIGLSAQCMPEWKKEAYGKTVMFGKRSRIPIQEQRQSLPIYRLKKELIEAVHRNQVL
VVIGETGSGKTTQVTQYLAEAGYTTGGKIACTQPRRVAAESVAKRVAEEFGCRLGEEVGY
SIRFDDNTGPGTVIKYMTDGMLLREIMIDSNLSSYSVVMLDEAHERTIYTDILFGMLKQL
IRRRTDLKLIVTSATLDAEKFSGYFFDCNILTIPGRTYPVEILYAKEAESDYMDAALITV
LQIHLSEPEGDILLFLTGQEEIDHACNSLHERMKLLGKDVPDLLINPVYSALPTEMQSKI
FEPAPPGKRKVIVATNIAEASITIDGICYVVDPGFAKLNVYNPKRGLDSLVITPISQASA
KQRAGRAGRTGPGKCYRLYTESAYRNEMPPTTTPEIQRINLGWTVLNMKAMGINELVSFD
FMDPPAPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPQEPPLSKMLLASVDLGCSDE
IVTIIAMVQTGNVFYRPREKQAQADRRRGNFFQPEGDHITLLTVYQAWKAKQFSGPWCFE
NFLQITSLRRAQDVRKQLLEIMDRHKLDVVSAGNDLMKVRKAITAGFFFNAARKDPQEGY
RTIADHQQVYIHPSSALFHQQPEWVIYNEIVMTTKEYMREVTAINPSWLVELAPRFYRSV
DSTKMSKRKRQERIEPLYDRYDEPNSWRLSKRRG
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgaagggatccggcggctcactcagctttctctcgtctccaaggtctgctcg
gagctggaggcccacctcgggaacggagagcgcgatctcgccgagttcatcgtccacctc
ggccgcgcctccccctccgtcgccgatttggacgccaagctcaaggcccacggctgcgag
gtaccggactacctcgcccgcaccctccacaccgtcatccacgccatccccgccgaccct
tccgccccccaaaaccccagctccagtaccaggagttttggggacaaagagggggaggag
gaggagaaggatggcgatcctgaactctaccaggtgttccacgggagggtcatccgggtg
gttgacacggggtgcttcgtccggctcgacggcgcgggcggccgcgagggtttcgtccac
gtctcccgtttgcccggcggctgcgtctccgtgaagcgcggtcaggaggtgtttgtcaag
gtcatctccgtgcagtggggcaatctggaattctcaatgcgggacgttgatcaggatacc
ggaagggagctcccgccaatgctgaccgatgtgccaaaggcaaatccaaagcctggtcgt
gctggagcctctgggaagaacgggattgggctgtccggaattgtgattcctgaggagcac
ggtgctggctctgcacgaagaaggccagtcaggcggatgagctctccagagaggtgggag
ctgaaacagctgcttgcttcgggggttatgaaggaccaccctttgttcgatcaggatgat
gagaatatacattaccaggaagaagaagtggaggaggagcttgagattgagcttaatgaa
gatgagccggcattcttatgtggacagggtcggtccttgattgaattgtctccagtgagg
atttccaataaccctgaggggtcgctaagccgagccgcgtcactgcagactgcacttgtc
aaggagcgtcgtgatattcggagccaggaacacagagcacttcttgactccatccctaaa
gatctgaatcgaccatgggaggatcctgtgcctgatgcaggtgggcggtatcttgctcat
gaactgaggggaattgggctatcagcacagtgcatgccagagtggaagaaagaggcttat
gggaagactgtaatgtttgggaagagatcgagaattccaatacaggagcagaggcagagc
cttccaatttataggctgaagaaagaactcatcgaagctgttcatcgcaatcaagttttg
gtggttatcggtgagacgggatcaggcaaaactacccaggttacgcagtatcttgctgag
gcaggctatacaacaggagggaaaattgcgtgtacgcagcctcggagggttgctgcagag
tcagttgcaaagcgagtagcagaagagtttggttgtcgattgggagaggaagttggttat
tctatacgctttgatgataacactggacctggtacggtcatcaagtatatgacagacggc
atgctcctacgggagattatgatagacagcaatctctcttcttattctgtggtcatgctt
gatgaggcacacgagaggaccatatatacggacattctctttggcatgctaaagcagcta
attaggcgtagaactgatcttaagttaattgtcacatctgccactcttgatgcagagaaa
ttctctggatattttttcgattgcaacattttaacaattcctggaagaacgtatcctgtg
gagatactatatgcaaaagaggcagagagcgattacatggatgctgcactgatcacagtg
ttgcagatccatctgagtgaacctgaaggtgatatcctcttgttcttgactggtcaggaa
gagattgatcatgcatgtaactctcttcatgagaggatgaagttgctgggtaaggatgta
cccgatttgctaatcaatccagtgtatagtgctcttcctactgaaatgcaatcgaagatc
tttgaacctgctcctccgggtaagaggaaggtgattgtggccaccaacatagcagaagca
tctattacaatagatggaatatgttatgttgttgacccaggctttgcaaaacttaatgtg
tataatccgaaacgaggactcgattcactggttatcactccaatctcacaggcgtcagct
aagcaaagagcagggcgtgctgggcgtacaggcccaggcaagtgttaccgtctgtacact
gaaagtgcctatcgtaatgaaatgccgcccacaacaacgccagaaatccagaggattaat
ttgggatggacagttcttaatatgaaggcaatggggataaatgaactagtgtcatttgac
ttcatggaccctccagcacctcaagctctcatctctgctatggaacagttgtacagcctt
ggtgccttagatgaagaaggcctgcttaccaaactcggaagaaagatggctgaatttccc
caagaaccaccactttcaaagatgcttcttgccagtgtggacctcggatgcagtgatgaa
atagttaccatcattgcaatggtccaaactggaaatgtattctatcggccaagggaaaaa
caagctcaagcggatcgtagaaggggaaattttttccagccagaaggggatcacatcaca
ttactcactgtgtatcaggcatggaaggcaaagcagttttcgggaccatggtgttttgag
aattttcttcagataacatcactaaggagagcacaggatgtgaggaaacagcttcttgag
atcatggacaggcataagcttgacgttgtatctgctggcaatgatctcatgaaggtaaga
aaagccatcactgcaggcttcttcttcaacgctgccaggaaagatccccaggaaggatac
aggaccattgctgatcatcagcaggtgtatatccacccaagcagcgcgctctttcatcag
cagccagagtgggtgatttacaatgaaattgtcatgaccacaaaagaatacatgagggag
gtcacagccattaacccttcgtggctcgtcgagttggccccgaggttctacagatctgtg
gactcaacgaagatgagtaagcggaagcggcaggaaagaatcgagcctctgtatgacaga
tatgatgagcccaattcatggcgcctcagcaagcgccgtgggtaa
DBGET
integrated database retrieval system
