Brachypodium distachyon (stiff brome): 100835825
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Entry
100835825 CDS
T01717
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100835825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100835825
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100835825
U7-dependent histone pre-mRNA processing factors
100835825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
100835825
NCBI-ProteinID:
XP_003565596
UniProt:
I1HB84
LinkDB
All DBs
Position
2:complement(509597..518776)
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AA seq
738 aa
AA seq
DB search
MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDHCDPSLLQPLARVAPTIDAVLL
SHPDIMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDYFLSRWQVADFDLFTLDDID
AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVSGHLLGGTVWKITKDGEDVVYAVDFNHRKE
RHLNGTALGSFVRPAVLITDAYNALNNQVYKRQQDQDFIDSMVKVLASGGSVLLPVDTAG
RVLELLLIMEQYWAQRHLVYPIYFLTNVSTSTVDYVKSFLEWMSDSISKSFEHTRDNAFL
LRYVSLIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEAKNLVLFTEKGQFGT
LARMLQVDPPPKAVKVTMGKRIPLVGDELKAYEEEQERIKKEELLKASLSKDEELKASHG
SNAKASDPMVVDASSSRKSSNAGSHVGGNVDILIDGFVPSTTSFAPMFPFFENTADWDDF
GEVINPDDYMMKQDEMDNNMMLGAGDGMDGKLDEGSARLLLDSAPSKVISNEMTVQVKCS
LAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCAKNSDLHVYAPQIEET
IDVTSDLCAYKVQLSEKLMSNVISKKLGEHEIAWVDAEVGKVDEKLNLLPPSSTPSAHKS
VLVGDLKLADFKQFLANKGLQVEFAGGALRCGEYITVRKIGDSNQKGSTGSQQIVIEGPL
CEDYYKIRELLYSQFFLL
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggggacgtcggtgcaggtgacgccgctcagcggcgcgtacggggagggccccctgtgc
tacctgctcgcggtcgacgggttccgcttcctcctcgactgcggctggaccgaccactgc
gacccctccctcctccagcccctcgccagggttgcgccaacaatagatgctgttcttctg
tctcatcctgacatcatgcatctaggagctttgccctatgccatgaagcatctcggacta
tctgcaccagtatatgcgacagaacctgtgtttaggctgggccttttgaccatgtatgat
tattttctatctagatggcaagttgcagactttgacttatttactttggatgatattgat
gctgcattccaaaatgttgtgagactaaaatactcacaaaatcaccttcttaatgataaa
ggtgaaggaatagttattgcgccgcatgtgtctgggcatcttttggggggtacagtatgg
aagataacaaaagatggggaggatgtcgtctatgctgttgacttcaaccatcggaaagag
aggcatttgaacggtactgccctcggatcttttgtacgtccagctgttttgattactgat
gcatacaatgccttgaacaatcaggtctacaaaaggcaacaggatcaagatttcattgat
tcaatggtgaaagttctagcaagtggtggtagtgtgctactgcctgtcgatacagctggt
agagttctagaacttcttttaataatggagcagtattgggctcaacgacatttggtctat
cctatctactttctgacaaatgtttctacgagtactgttgattatgtcaagagttttctt
gaatggatgagtgattcgatctcaaagtcttttgagcacactagagacaatgccttctta
ttgagatatgtctcgctgataattaacaaagaagagctggagaaactgggagatgctcca
aaggtggttctagcgtccatggcaagtttggaggttggcttttctcatgacatatttgtt
gagatggcaaatgaagccaaaaatctagtgctttttactgagaaggggcagtttgggaca
cttgctcgcatgcttcaagtggatccaccccccaaagctgtaaaggtcactatgggcaag
cgaattcctttagttggtgatgagctgaaagcttatgaagaggaacaagaacggataaaa
aaggaagaattgctaaaggctagcctcagcaaagatgaggagctaaaggcttctcatgga
tcaaatgcaaaggcttctgatcccatggtcgttgatgcaagttcgtctcgtaaatcatcc
aatgctggctcacatgttggcggaaatgtggatattctaattgatggatttgtcccttcg
acgaccagctttgctccaatgtttcctttttttgaaaatactgctgactgggatgacttt
ggcgaggtcatcaatcctgatgattatatgatgaaacaagacgaaatggataataatatg
atgcttggtgctggagatggtatggatggtaagcttgacgagggctcagcacgcttgctt
cttgattcagcaccttcaaaagttatttccaacgagatgactgtgcaagtgaagtgctca
ttggcgtatatggactttgaaggtcggtccgatgggcgttctgtaaaatcagttattgct
catgtagccccactgaaacttgttttggtacatgggtcagcagaagctactgaacattta
aaaatgcattgtgcaaagaactcagacttgcatgtttatgctcctcagatagaagaaaca
attgatgtaacttcagacttatgtgcttacaaggtgcaactttcagagaagttaatgagc
aatgtcatttctaagaagttgggcgagcatgaaattgcgtgggttgatgcagaagttgga
aaagtggatgagaagcttaatctgctacccccctcgtcaactccatctgcccacaaatca
gttcttgttggtgatctgaaattggccgatttcaagcaattcctagcaaataaaggtcta
caggttgagtttgctgggggtgctctacggtgcggcgagtacatcacagtgcgcaagatt
ggtgattctaaccagaagggcagcacgggttcgcagcagattgtgatcgaaggtccgctg
tgcgaggactactacaagatccgtgagctcctttactcccagttcttcttgttgtaa
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