KEGG   Brachypodium distachyon (stiff brome): 100835845
Entry
100835845         CDS       T01717                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40 isoform X2
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13]
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100835845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bdi03041]
    100835845
   03009 Ribosome biogenesis [BR:bdi03009]
    100835845
Enzymes [BR:bdi01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     100835845
Spliceosome [BR:bdi03041]
 Complex A
  U1 snRNP components
   U1 related factors
    100835845
 Complex B
    100835845
Ribosome biogenesis [BR:bdi03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    100835845
SSDB
Motif
Pfam: DEAD Helicase_C ResIII WW ERCC3_RAD25_C FMP27-BLTP2_C
Other DBs
NCBI-GeneID: 100835845
NCBI-ProteinID: XP_010230488
UniProt: A0A0Q3JWI9
LinkDB
Position
2:2786392..2794219
AA seq 1369 aa
MASAEAAADSSGPRFAPDDPTLPAPWKALIDGATLYYWNPETNVTQYDKPAAAAAAAAPP
LPAAAPAPVPGAFAQPGMQLGGQAGQQQQPQQTAQQPPFQYQAQQQQPQQTAQQPPFQYQ
APQAQQVPYHHQQQQEHMGNQQQMSQQPPAPQYPNAHPHQMLYQHGPYMQPQQQGQQYSY
QAGQHPQMPQTPYNQGQQPPIPQAANQGQQPTMPPGAYTQGQRPPMPQSAYSHGPRPPMP
QAAYNQGQQPQMPQAAYNQGQQPQMPQAAYDQGQQLQGARIPQSQVQHTKQSPGFHQPAQ
ASQVLPTSQPQGLQMSPRQGQPQHGFQFTHQQGKQPHQGHIGAHVSQLSHGQQSSAVKLD
AGGHEGMQSGFALPISLQRGQAPPLSNQQLPSNHQRPEAHNQLSIHGVHGVGGPAYPAKH
HLGGSSPGETNKMSFMSLPAQAHQGGVETNYRQQLPSSHAVPNHITPSPGQPPIGFNRSS
SEDQFEKNEPHSSGRFDGINALQQQPKLAALPPSQIRLDMRNGAPYPQPDNFGGYNMAPP
NPVQNPHNHVPFPIGALTRPPPGTFSPPDFPSVASVDAYREHHEVTAVGENVPPPFMTFE
ATGFPPEILREVHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAFVHLR
RCQNNPMLGPTVLVLAPTRELASQIQDEALKFGRSSRVSCTCLYGGAPKPPQLRELERGA
DIVVATPGRLNDILEMKKISLHQISLLVLDEADRMLDMGFEPQIRKIVDEIPRNRQTLMY
TATWPKEVTKIAGDLLRDPVQINIGSIDELVANKSITQYVEMVPPMDKQRRLEEILRAQE
RGSKIIIFCSTKKMCDQLARGIGRSFGAASIHGDKSQGERDHILNQFRTGRVPVLVATDV
AARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGIAFTFFSEQDWKYAGDLVKVL
DGTSQPVPPELQQMAARGAPGAPRHQAGGMSRWDGPGGSSRFESAVNGPGGYGGFREGPG
GFGGRDGPGGFVDRDGPGMFGDRDGPGRFGGRDGPGGFGGRDGPGGFGGRMGPGGFGGRE
GPVGFGGREGPGPSGFSGRGGRGSDGFGRRGGASPGRFGGHGGRSDSPGFGGRGRGDSSG
FGGRGRGDFSGGRGGRGRGFGGRGRSDRSPHDRFISDGRGRYDDRRGFGDKGRGRSYSRS
PDRGRSRGYDRRSDSRSLSSRSRSRSRSWSRSRSRSRSWSRSRSRSRSRSRSRDQGAGLE
RRPRARSGFDVLPPATEAGPVLTGPVPVSEPVPAVAALRPGQALVETLDMSPMSPGGLVQ
EGGPFIGGNDANISSARADQASHGTDLAIPPSFSAPENFPGLTGQQDAP
NT seq 4110 nt   +upstreamnt  +downstreamnt
atggcgagtgcggaggctgccgcggattcgtcgggcccgcgattcgcccctgatgacccg
acgctcccggcgccctggaaagcgctaatcgacggcgccacgctctactactggaatcct
gagacgaacgtgactcagtatgacaagccggctgccgccgcagccgcagctgcgcccccg
ttgcctgcggctgcgccggctcctgttcctggggcttttgcgcagcctggcatgcagttg
ggcggccaagctgggcagcagcagcagccccaacagacggcacagcaaccaccgtttcag
tatcaagcacagcagcagcagccccaacagactgcgcagcaaccgccgtttcagtatcaa
gctccgcaagcacaacaggtgccctatcatcatcagcagcaacaagaacatatggggaac
cagcagcagatgtcacagcagccacctgctcctcagtacccgaacgcgcatccgcaccaa
atgctgtaccagcatggtccatatatgcaaccccagcagcagggacaacaatattcatac
caggcaggccagcatccacaaatgccacaaactccctataatcaaggccaacagccgcca
atcccacaagctgcaaatcaaggtcagcagccaacgatgccaccaggtgcctacactcaa
ggtcagcgtccaccaatgccgcaatctgcctacagtcatggtccgcggccgcctatgcca
caggctgcctacaatcaaggccagcagccacagatgccgcaagctgcctacaatcaaggc
cagcagccacaaatgccgcaagctgcctacgaccaaggccagcagttacagggagcgaga
atccctcagagtcaagtgcagcacactaagcaatcaccaggttttcatcaacctgcccag
gcttcacaagtgctgccaacttcacagcctcaaggccttcaaatgtctcctcgacagggc
caaccccagcatggcttccagttcacccatcagcagggaaaacagccgcatcaaggccat
attggggcccacgtgagccaattgtcacatgggcaacaaagttccgcagttaagcttgac
gcgggaggtcatgaagggatgcagtctggctttgcattaccaatcagtctgcagcgtggt
caagctcctcctctctcaaaccagcagttgccctctaatcatcaacgtcctgaagcccat
aatcaattaagtattcatggagttcatggtgtcggaggaccagcatatcccgcaaagcat
catcttggtggatcatccccaggtgagactaacaagatgagtttcatgagcttgcctgct
caagcacatcaaggtggagtggagacaaactaccggcaacaactgcctagcagccatgca
gttccaaatcatattactccttcaccaggtcaacctccaattggtttcaacaggagcagt
agtgaagatcaatttgaaaaaaacgagcctcactcttctgggagatttgatggaataaat
gctctccagcagcagccaaaacttgctgctcttccaccttcacaaatccgcctggatatg
aggaacggagcaccttatcctcagccagacaattttggtggttataacatggcacctccg
aatccagtgcaaaacccacataaccatgttccatttcctatcggagctttaacgagacca
ccgcctggaaccttttctcctccggatttcccgagtgttgcatcagttgatgcatatcgt
gaacaccatgaagtcactgcagtgggtgagaatgttcctcctccgtttatgacatttgag
gctactggattccctcctgagatcctgagagaggtccacgctgctggcttcttaaatccc
accccaattcaggctcaaacatggcctgttgcacttcaaaaccgggacatagtagccatt
gccaagacgggatctgggaagacactggggtaccttattcccgcatttgtacatctgagg
agatgccaaaacaatccaatgttgggccctacagtgttggttttggcccctactcgtgag
cttgcttcacaaatacaagatgaagcacttaagtttggtcgatcatctagagtctcatgc
acgtgcctatatggtggagcaccaaagccacctcagcttagagaactagagcggggagca
gatattgtggtagctacacctggacgacttaatgatattctggaaatgaagaagattagc
ctccatcagatttcactacttgtgcttgacgaagctgaccgcatgcttgacatgggtttt
gagccacaaatacggaagattgttgatgagattcctcgtaatagacagactctgatgtac
actgccacgtggccgaaagaagtgacaaaaatagctggggatttattgagagatcctgtc
cagatcaatattggtagcattgatgaacttgttgccaacaaatccatcactcagtatgtg
gagatggttccaccaatggacaagcagcgtcgcttggaggagattctgagagctcaagaa
aggggctcgaagattatcatattttgctcaaccaagaaaatgtgcgaccagcttgctcgt
ggcattggtcgtagttttggtgctgcaagtattcatggtgataaatcacagggtgaaagg
gatcatattctcaatcagtttcggactggcagggttccagtattagtggccacagatgtt
gctgctcgtggacttgacatcaaagacattagagtggtgatcaattatgacttcccaact
gggatcgaagactatgtgcatcgcataggccgtacaggaagagctggggccactggaatt
gcattcactttcttctccgaacaagattggaaatatgccggtgacttggtgaaagtcttg
gatggtactagtcagcctgtacctccagaactgcaacagatggctgcacgtggtgcacct
ggagctccaagacaccaggccggtggcatgagccgttgggatgggcctggtggtagtagt
cgttttgaatctgctgttaatggccctggtggttatggtggatttagggagggccctggc
ggctttggtggtcgggatggcccaggtggatttgttgatcgagatggcccgggtatgttt
ggtgatcgagatggccctggacgctttggtggcagggacggtcctggtggcttcggtggt
cgggatggtcctggtggcttcggtggacggatgggtcctggtggcttcggtggacgggaa
ggtcctgttggatttggtggaagggagggtcctgggcccagtggcttcagtggaagaggg
ggccgtggatctgatggctttggcagaagaggtggagcaagtcctggtagatttggtggt
catggtggcaggagtgattctcctggttttggtgggcgtggtaggggtgattcttctggt
tttggtggaagaggcaggggtgatttctccggaggacgcggtgggagaggccgtggattt
ggagggcggggacgttctgaccgaagcccgcatgatcgttttatctcagatggacgtgga
agatatgatgaccgtcgaggatttggcgacaagggtcggggcaggagctacagccgtagc
cctgatagaggccgctcgcgaggctatgatagaagaagtgatagcaggagcctaagtagc
cggagcagaagccgtagcaggagctggtcacgcagcagaagccgcagcaggagttggtcg
cggagccgcagtcggagtcgcagcaggagcaggagccgtgaccagggtgcaggattggaa
cgtaggccacgggcaagatctggttttgatgtactgccacctgcaactgaagctggacct
gttttaactgggcctgtacctgtatctgaaccagtacctgctgttgctgcactcagacct
ggacaagcgctggtcgaaacattggatatgtcacctatgtcgcctggtggcttggttcag
gagggcggaccattcattggtgggaatgatgccaacatcagcagtgcccgagctgaccag
gcttctcatggaactgatcttgcaataccaccaagcttttctgcaccggaaaattttcca
ggtctgactggtcagcaggatgccccatga

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