Brachypodium distachyon (stiff brome): 100835845
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Entry
100835845 CDS
T01717
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40 isoform X2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
3.6.4.13
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100835845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100835845
03009 Ribosome biogenesis [BR:
bdi03009
]
100835845
Enzymes [BR:
bdi01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
100835845
Spliceosome [BR:
bdi03041
]
Complex A
U1 snRNP components
U1 related factors
100835845
Complex B
100835845
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
Pre-60S particles
Helicases
100835845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
FMP27-BLTP2_C
Motif
Other DBs
NCBI-GeneID:
100835845
NCBI-ProteinID:
XP_010230488
UniProt:
A0A0Q3JWI9
LinkDB
All DBs
Position
2:2786392..2794219
Genome browser
AA seq
1369 aa
AA seq
DB search
MASAEAAADSSGPRFAPDDPTLPAPWKALIDGATLYYWNPETNVTQYDKPAAAAAAAAPP
LPAAAPAPVPGAFAQPGMQLGGQAGQQQQPQQTAQQPPFQYQAQQQQPQQTAQQPPFQYQ
APQAQQVPYHHQQQQEHMGNQQQMSQQPPAPQYPNAHPHQMLYQHGPYMQPQQQGQQYSY
QAGQHPQMPQTPYNQGQQPPIPQAANQGQQPTMPPGAYTQGQRPPMPQSAYSHGPRPPMP
QAAYNQGQQPQMPQAAYNQGQQPQMPQAAYDQGQQLQGARIPQSQVQHTKQSPGFHQPAQ
ASQVLPTSQPQGLQMSPRQGQPQHGFQFTHQQGKQPHQGHIGAHVSQLSHGQQSSAVKLD
AGGHEGMQSGFALPISLQRGQAPPLSNQQLPSNHQRPEAHNQLSIHGVHGVGGPAYPAKH
HLGGSSPGETNKMSFMSLPAQAHQGGVETNYRQQLPSSHAVPNHITPSPGQPPIGFNRSS
SEDQFEKNEPHSSGRFDGINALQQQPKLAALPPSQIRLDMRNGAPYPQPDNFGGYNMAPP
NPVQNPHNHVPFPIGALTRPPPGTFSPPDFPSVASVDAYREHHEVTAVGENVPPPFMTFE
ATGFPPEILREVHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAFVHLR
RCQNNPMLGPTVLVLAPTRELASQIQDEALKFGRSSRVSCTCLYGGAPKPPQLRELERGA
DIVVATPGRLNDILEMKKISLHQISLLVLDEADRMLDMGFEPQIRKIVDEIPRNRQTLMY
TATWPKEVTKIAGDLLRDPVQINIGSIDELVANKSITQYVEMVPPMDKQRRLEEILRAQE
RGSKIIIFCSTKKMCDQLARGIGRSFGAASIHGDKSQGERDHILNQFRTGRVPVLVATDV
AARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGIAFTFFSEQDWKYAGDLVKVL
DGTSQPVPPELQQMAARGAPGAPRHQAGGMSRWDGPGGSSRFESAVNGPGGYGGFREGPG
GFGGRDGPGGFVDRDGPGMFGDRDGPGRFGGRDGPGGFGGRDGPGGFGGRMGPGGFGGRE
GPVGFGGREGPGPSGFSGRGGRGSDGFGRRGGASPGRFGGHGGRSDSPGFGGRGRGDSSG
FGGRGRGDFSGGRGGRGRGFGGRGRSDRSPHDRFISDGRGRYDDRRGFGDKGRGRSYSRS
PDRGRSRGYDRRSDSRSLSSRSRSRSRSWSRSRSRSRSWSRSRSRSRSRSRSRDQGAGLE
RRPRARSGFDVLPPATEAGPVLTGPVPVSEPVPAVAALRPGQALVETLDMSPMSPGGLVQ
EGGPFIGGNDANISSARADQASHGTDLAIPPSFSAPENFPGLTGQQDAP
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgcggaggctgccgcggattcgtcgggcccgcgattcgcccctgatgacccg
acgctcccggcgccctggaaagcgctaatcgacggcgccacgctctactactggaatcct
gagacgaacgtgactcagtatgacaagccggctgccgccgcagccgcagctgcgcccccg
ttgcctgcggctgcgccggctcctgttcctggggcttttgcgcagcctggcatgcagttg
ggcggccaagctgggcagcagcagcagccccaacagacggcacagcaaccaccgtttcag
tatcaagcacagcagcagcagccccaacagactgcgcagcaaccgccgtttcagtatcaa
gctccgcaagcacaacaggtgccctatcatcatcagcagcaacaagaacatatggggaac
cagcagcagatgtcacagcagccacctgctcctcagtacccgaacgcgcatccgcaccaa
atgctgtaccagcatggtccatatatgcaaccccagcagcagggacaacaatattcatac
caggcaggccagcatccacaaatgccacaaactccctataatcaaggccaacagccgcca
atcccacaagctgcaaatcaaggtcagcagccaacgatgccaccaggtgcctacactcaa
ggtcagcgtccaccaatgccgcaatctgcctacagtcatggtccgcggccgcctatgcca
caggctgcctacaatcaaggccagcagccacagatgccgcaagctgcctacaatcaaggc
cagcagccacaaatgccgcaagctgcctacgaccaaggccagcagttacagggagcgaga
atccctcagagtcaagtgcagcacactaagcaatcaccaggttttcatcaacctgcccag
gcttcacaagtgctgccaacttcacagcctcaaggccttcaaatgtctcctcgacagggc
caaccccagcatggcttccagttcacccatcagcagggaaaacagccgcatcaaggccat
attggggcccacgtgagccaattgtcacatgggcaacaaagttccgcagttaagcttgac
gcgggaggtcatgaagggatgcagtctggctttgcattaccaatcagtctgcagcgtggt
caagctcctcctctctcaaaccagcagttgccctctaatcatcaacgtcctgaagcccat
aatcaattaagtattcatggagttcatggtgtcggaggaccagcatatcccgcaaagcat
catcttggtggatcatccccaggtgagactaacaagatgagtttcatgagcttgcctgct
caagcacatcaaggtggagtggagacaaactaccggcaacaactgcctagcagccatgca
gttccaaatcatattactccttcaccaggtcaacctccaattggtttcaacaggagcagt
agtgaagatcaatttgaaaaaaacgagcctcactcttctgggagatttgatggaataaat
gctctccagcagcagccaaaacttgctgctcttccaccttcacaaatccgcctggatatg
aggaacggagcaccttatcctcagccagacaattttggtggttataacatggcacctccg
aatccagtgcaaaacccacataaccatgttccatttcctatcggagctttaacgagacca
ccgcctggaaccttttctcctccggatttcccgagtgttgcatcagttgatgcatatcgt
gaacaccatgaagtcactgcagtgggtgagaatgttcctcctccgtttatgacatttgag
gctactggattccctcctgagatcctgagagaggtccacgctgctggcttcttaaatccc
accccaattcaggctcaaacatggcctgttgcacttcaaaaccgggacatagtagccatt
gccaagacgggatctgggaagacactggggtaccttattcccgcatttgtacatctgagg
agatgccaaaacaatccaatgttgggccctacagtgttggttttggcccctactcgtgag
cttgcttcacaaatacaagatgaagcacttaagtttggtcgatcatctagagtctcatgc
acgtgcctatatggtggagcaccaaagccacctcagcttagagaactagagcggggagca
gatattgtggtagctacacctggacgacttaatgatattctggaaatgaagaagattagc
ctccatcagatttcactacttgtgcttgacgaagctgaccgcatgcttgacatgggtttt
gagccacaaatacggaagattgttgatgagattcctcgtaatagacagactctgatgtac
actgccacgtggccgaaagaagtgacaaaaatagctggggatttattgagagatcctgtc
cagatcaatattggtagcattgatgaacttgttgccaacaaatccatcactcagtatgtg
gagatggttccaccaatggacaagcagcgtcgcttggaggagattctgagagctcaagaa
aggggctcgaagattatcatattttgctcaaccaagaaaatgtgcgaccagcttgctcgt
ggcattggtcgtagttttggtgctgcaagtattcatggtgataaatcacagggtgaaagg
gatcatattctcaatcagtttcggactggcagggttccagtattagtggccacagatgtt
gctgctcgtggacttgacatcaaagacattagagtggtgatcaattatgacttcccaact
gggatcgaagactatgtgcatcgcataggccgtacaggaagagctggggccactggaatt
gcattcactttcttctccgaacaagattggaaatatgccggtgacttggtgaaagtcttg
gatggtactagtcagcctgtacctccagaactgcaacagatggctgcacgtggtgcacct
ggagctccaagacaccaggccggtggcatgagccgttgggatgggcctggtggtagtagt
cgttttgaatctgctgttaatggccctggtggttatggtggatttagggagggccctggc
ggctttggtggtcgggatggcccaggtggatttgttgatcgagatggcccgggtatgttt
ggtgatcgagatggccctggacgctttggtggcagggacggtcctggtggcttcggtggt
cgggatggtcctggtggcttcggtggacggatgggtcctggtggcttcggtggacgggaa
ggtcctgttggatttggtggaagggagggtcctgggcccagtggcttcagtggaagaggg
ggccgtggatctgatggctttggcagaagaggtggagcaagtcctggtagatttggtggt
catggtggcaggagtgattctcctggttttggtgggcgtggtaggggtgattcttctggt
tttggtggaagaggcaggggtgatttctccggaggacgcggtgggagaggccgtggattt
ggagggcggggacgttctgaccgaagcccgcatgatcgttttatctcagatggacgtgga
agatatgatgaccgtcgaggatttggcgacaagggtcggggcaggagctacagccgtagc
cctgatagaggccgctcgcgaggctatgatagaagaagtgatagcaggagcctaagtagc
cggagcagaagccgtagcaggagctggtcacgcagcagaagccgcagcaggagttggtcg
cggagccgcagtcggagtcgcagcaggagcaggagccgtgaccagggtgcaggattggaa
cgtaggccacgggcaagatctggttttgatgtactgccacctgcaactgaagctggacct
gttttaactgggcctgtacctgtatctgaaccagtacctgctgttgctgcactcagacct
ggacaagcgctggtcgaaacattggatatgtcacctatgtcgcctggtggcttggttcag
gagggcggaccattcattggtgggaatgatgccaacatcagcagtgcccgagctgaccag
gcttctcatggaactgatcttgcaataccaccaagcttttctgcaccggaaaattttcca
ggtctgactggtcagcaggatgccccatga
DBGET
integrated database retrieval system