Brachypodium distachyon (stiff brome): 100835878
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Entry
100835878 CDS
T01717
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100835878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100835878
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100835878
mRNA degradation factors
5'-3' decay
Decapping complex
100835878
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
100835878
NCBI-ProteinID:
XP_010228364
UniProt:
I1H3K8
A0A0Q3S6S6
LinkDB
All DBs
Position
1
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AA seq
919 aa
AA seq
DB search
MRQTDVDTPTLFLPLSLSLSPDAARKERPESGQRRRRPNPATDSALAGECAGWNRSWGTM
DDERLYGLLGMREEAGRAMAGMLPNPAVAGATSNPEEDSRGDTKFNASQYAFFGNNVMEE
VELGGLDDDDDGSGDAGFVGLGDEEYPSTYTSDVLEDEGVGSFTGVDDLAGTFSKLNRIV
NEPKHHGVVGQGGSVSRQSSSTADWMQEPEPSYWPKQPVLDTEQGLDNRKWPSQSPQLAH
FSDSRLHRTSSSPHQDAQYNPSESILRPRPFSLNRMSSYPQQEPQYNHTEPIPVPKSSFI
SYPPSASASHSSPGEPHHMNMPSPPTAFHMPMPAQNELAFSHFHHGGTPPGPPFGRNLVH
MGSPGLSTNIMQQNHVVNSVPVQGNGDRFTPILMERPNGLIPPQMPPPRQQHGMRPVQQS
SPQFSQLQAHMLGPRHSPPQNMQMFSPQHPPSQMRGRFDANFGMPDLSDPRARSMLHHGW
QAQRYPPQGFEPGNMRMDNGWPRFRSKYMSTEEIENIARMQQAATHSNDPYIDDYYHQAC
LARKSAGARLKHHFCPTLIRDPSSRARSKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEA
STPSDNIPEKSASKTLDQEPMLAARITIEDGLCHLLDVDDINRLLQFSQQQDGGLQLTNR
RQALLEQLGESLQLVDPLGPNKGAPLSPNDDLVFLRIISLPKGRKLLSRYLELVTPSSEL
ARIACMAVFRHQRFIFGNFPSDISAARTTTKLVSAVSTCVRQMELSGLSACLAATVCSSL
QPPLRPLGHAAGDGASIIIISVLERATELLTDQHVASTYSMQNRGLWQASFDAFFRLLTE
YCMSRFDSVVHTVQMQPSAAAAISREIPVELLRASLPHTNENQRKQLLNFAQRTVPINNA
QIAHQPGNGPMTPGGPKQR
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcgacaaaccgacgtggatacccctactctctttctccctctctctctctctctatct
cccgacgccgccagaaaggagcgacccgagtccggccagcggcggcggcgaccaaatccg
gcgactgactcggcacttgctggcgagtgtgcagggtggaaccgatcttggggaaccatg
gatgatgagcggttgtatggtttgcttggcatgcgggaggaggctgggcgagccatggcg
ggcatgctaccgaacccggcagttgctggtgccacttcaaatccagaagaagactctcga
ggcgataccaaattcaatgcatcacaatacgctttctttgggaacaatgtgatggaagag
gttgagctaggtggattggatgatgatgatgatggttctggcgatgctggttttgttggg
cttggtgatgaagaatacccttccacctatacaagtgatgtgttagaggatgaaggtgtg
ggttcatttactggtgttgatgatcttgctggaacattctcaaagctgaacagaattgtt
aatgagccaaaacaccatggagtagttggtcaggggggttcagtttctagacaaagttcc
tctactgcagactggatgcaagagcctgaaccttcatattggcctaagcagcctgtattg
gacactgagcaagggctggataacaggaaatggccatcccaatcccctcaattagcccac
ttttccgattccagactgcacaggacatcctcgtctccacaccaagatgcacaatacaat
cctagtgaatctattctcagaccaaggccattttctttgaacagaatgtcgtcatatccc
caacaagagccccaatacaatcataccgagccaattcctgtgcctaagtcgtctttcatt
tcgtaccctccatctgcttcagcatctcattcttcacctggtgagccacatcacatgaac
atgccatctcctcccactgcattccatatgcctatgcctgcacaaaatgaactagccttt
tcccatttccatcatggaggtacacctccagggccaccatttggtcggaacttggttcat
atgggttcaccaggcttatcaacgaacattatgcagcaaaaccatgttgtaaatagtgta
ccagttcaggggaatggtgacaggtttacaccgattttaatggagcgtccaaatggattg
attccacctcaaatgccaccaccgcgccaacaacatggaatgcgcccagttcaacagtct
tcaccacagttctcacaactacaggcccatatgcttggtcccaggcattctccaccacag
aacatgcagatgttcagtcctcagcatcctccatcgcaaatgaggggtaggtttgacgca
aattttgggatgcctgatttgagtgatccaagagcaagatcaatgttgcaccatggttgg
caggcccaacgttatcctccccaaggatttgagcctggcaatatgaggatggataatggg
tggccacggttcagatccaaatacatgtccactgaagaaatagagaacattgcaaggatg
cagcaagccgctactcacagcaatgatccatacattgatgattactatcaccaagcttgt
ttggctagaaaatcagcaggagcacgactgaagcaccacttctgtccaaccttgatcaga
gatccatcttctcgtgcacgcagcaaggatgagccacatgcatatcttcaggttgatgct
cttgggaggctcccattttcttccatccgcaggcctcgtccacttcttgatgttgaagcc
tctactccaagtgataacattcctgaaaaatctgcttcaaaaactcttgatcaggagcct
atgcttgctgctagaatcacaatagaagatggtctctgtcatctacttgatgtagatgac
attaatcgcttgctacaatttagccagcagcaagacggtggtttacaactgacaaacaga
aggcaggctctccttgagcagctgggtgaatcattgcagttagttgatccacttggacct
aataagggtgcacctctatcgccaaatgacgacctggtgtttcttcgcataatctctctg
ccaaagggccggaaactactttctcggtaccttgaacttgtgactccaagcagcgagctt
gcaaggattgcttgcatggcagtttttcggcaccaaagatttatatttggcaattttccc
tcagatatcagtgcagctaggacaactactaaacttgtgagtgctgtatccacctgtgtt
cgtcagatggagttgagtggcctaagtgcctgtcttgcagcaactgtgtgttcatcatta
cagccacctcttcgaccccttggacatgctgcaggtgatggggcctccatcatcataata
tctgtactggagagagcaacagagcttctcactgatcagcatgtggcctctacctacagt
atgcagaaccgaggcctatggcaggcatcgtttgatgccttcttcaggctgcttacagag
tactgcatgagtagatttgatagtgtggttcatacagtgcaaatgcaaccttctgctgcg
gctgcgataagcagagagataccagtagagcttctgcgtgccagccttcctcacacaaat
gagaatcagcgtaagcagttgctcaattttgcgcagcgaactgtgcccatcaacaacgcc
cagattgctcatcaacctggtaatggacccatgacaccaggcggacccaagcagagatga
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