Brachypodium distachyon (stiff brome): 100836006
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Entry
100836006 CDS
T01717
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100836006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100836006
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100836006
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_11
RRM_PARP14_3
Nup35_RRM_2
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
100836006
NCBI-ProteinID:
XP_003562808
UniProt:
I1GSY3
LinkDB
All DBs
Position
1:complement(18673620..18679520)
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AA seq
472 aa
AA seq
DB search
MEADSGKLFVGGISWETDEERLREYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEPGVA
ERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEV
EFRRYFEQFGMITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKR
AVPKEQSPGPVARSPAGGQNYAISRVHNFLNGFNQGYNPNPIGGYGMRVDGRFGLLSGAR
NGFSSFGPGYGMGMNVEAGMNSNFGVNSNFLNNSNGRQIGSYYNGGSNRLGSPIGYVGLN
DDSGSILSSMGRNVWGNGNVNYQNSPTNMNSFIPSGSGSQVGITGDSINWGGPTSAHGMG
SISGLTSGNLGRGTGDNFGLPSGSYGRSNPTGTIGEPFSASANAYEMNSIDTYGNNSIYG
DSTWRFTSSEIDIPPFDNDLGNIDPDIKSNMPGSYMGNYTVNNNQTSRGITS
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggactccgggaagctcttcgtcggcggcatctcctgggagacggacgaggaa
cgcctccgcgagtactttggccgcttcggggaggtcacggaggccgtcatcatgcgggac
cgcaacactggtcgcgcccgtgggtttgggttcatagtcttcgctgagccaggcgttgct
gagcgagtcaccatggacaagcacatgatcgacggccgcatggtcgaagcaaagaaagct
gttcccagagatgaccagagcatcgcaagcaagaacaatggcagcagcataggctcgcct
ggaccagtgcgcaccagaaagatctttgttggaggcctggcttccaatgttactgaagtt
gaattcagaaggtattttgagcaatttggtatgataacagatgtggttgtcatgtacgac
cacaacacgcagaggcctaggggctttggcttcatcacttatgattcagaagatgcagtg
gataaggctctgcacaagaacttccatgagcttaatggtaagatggttgaagtcaagagg
gctgtcccaaaggagcaatcacctggacctgttgcacggtcacctgctggaggccagaac
tatgctattagtagggttcataacttcttgaatggcttcaaccagggctataatccaaac
ccgataggaggttatggaatgagggtggatggaaggtttggtcttctctcgggcgcccga
aatgggttctcgtcatttggccctggttatggaatgggcatgaatgttgaagctgggatg
aactcaaattttggcgtgaactctaatttcctcaataactcaaatgggcggcaaattggt
tcatactacaatggtggttcaaacagattaggcagtcctattggttatgttgggcttaat
gatgattcaggatcaatattaagttcaatgggaaggaatgtttggggtaatggaaatgtg
aactaccagaacagccctacaaacatgaactcttttataccatctggaagtgggagtcaa
gttggtattactggagatagcataaactggggaggtcctacgtctgcccatggtatgggc
agcatttcaggcctcacatctggtaaccttggccgtggaactggagataactttggtttg
ccctctggcagctatgggaggagcaacccaactggcaccattggtgaacctttttctgca
tctgccaatgcatatgagatgaacagcatagatacatatggcaacaactctatttatggt
gactcaacctggaggttcacatcatctgagatcgacattcctccttttgataatgatctt
ggaaatattgatccagatattaaatcaaacatgccaggaagttacatgggcaactatact
gttaataataatcagacaagcagaggtatcacttcctag
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