Brachypodium distachyon (stiff brome): 100836380
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Entry
100836380 CDS
T01717
Name
(RefSeq) serine/arginine repetitive matrix protein 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100836380
03015 mRNA surveillance pathway
100836380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100836380
03041 Spliceosome [BR:
bdi03041
]
100836380
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100836380
Spliceosome [BR:
bdi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
100836380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
100836380
NCBI-ProteinID:
XP_010228812
UniProt:
I1H719
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All DBs
Position
1:65835789..65844477
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AA seq
844 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKHAKLLKTQKFASELDHQVDMSKVKMDVMKPWIATRVTELL
GFEDEVLINFIYGLLDVKEVDGKHIQIQLTGFMEKNTVKFMKELWSLLLSAQQNASGVPQ
QFLDAKEAEIKQRKAEEDRIAQEIQKKREKDGRGTEVDKRKVMDGDTSNPRFYGDSLGSA
LNNPIVDAEKEKELDSKYSSRTKSREHRRPRSTSLSPRGRQRSVSPRRRSPSPSRHSLSF
ERRQRSTRRSTSPRRSVSPRRHSPRHAPLASRRRSPYSRRSPSVPRSPSPRRRFHSRRIS
PPSGRRGSLSPHRHRSPARALRRSPSPARRRSPARHRFPADRHWSPSAGRRRPRSPSPVR
RRPRSPSPGRRRPRSPSPGRRRLRSPARRRSPSPPRSPQLRSPKRQRNSPISIKTLPGNR
RASPQRRRSTSPYSRSPNPPPRSLNRDNKKGTNGVPSKDGDMPQRNQERRSYADDGNDRE
MSDHRSPGSEHHRSTKSLRSPTNNSERVSTDDNPKKTRKHLPSQDITDASGDEEEGSRAR
ENARKANSSRRKLKDFSADPELNKVHDDSLGLGEKSPSRSQQDGKDIHSKHDNQLSDSSE
DGRGSGRKKRQFDSPDDSLVKQQSPSRAGMDETNNEHAIGSHGTVAEKNYLVKVDEASQS
DGGSPLQKAKKSSNHIDYRSSGSEESEKHRSQSEKRRHKKSHKHKRHHDDSSESDSESDD
KESKRRRREEKRLRKEERRLRRDERHRRRADRHASKQKMNYLGTPPSDLEKDREPGSDAD
ARKKGSYTSREESDPKKLEVELRQRALESLSAKKLKHVVTPSPDEKDREPNSDADVRKEV
SYTG
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggggcttcttccgggggacgtcggctgatcaggatacccgcttctccaacaag
catgccaagcttctcaagactcagaagttcgcgtccgagctcgatcaccaggtggacatg
tcaaaggtgaagatggacgtgatgaagccgtggattgcgacgcgggtcaccgagcttctt
gggttcgaggacgaagtgctcatcaacttcatctacggcctccttgatgtgaaggaggtg
gacggaaagcacatacagatccagctgacagggttcatggagaagaacacagtgaagttc
atgaaggagctgtggagtctgctccttagtgcacagcagaatgcaagtggtgtgccccaa
caatttttggatgcaaaggaggctgagattaagcagaggaaggcggaggaggatagaatt
gcccaagagatccagaagaaacgagagaaagatggaaggggcactgaagtggataaacgt
aaagtgatggacggggataccagtaatccaagattttatggtgattcacttggctctgct
ttaaataatcccattgttgatgctgagaaagagaaggagttggactcgaaatacagctca
agaacaaagagcagggaacatcgcagacccagaagcacatctttgtcgccccgtggtagg
cagcgatctgtttctcctaggaggcgttctccatccccttccaggcattccctttctttt
gagagacggcaaagatcaacacgacgttcaacttcacctagacgttctgtttccccccga
aggcattctccaagacatgctcctttagcatctaggcggaggtcaccgtattctaggaga
tcaccttcagtaccgagatccccatcacctcgccgaagatttcatagtaggagaatatct
ccaccttctgggcgacgcggatcactatctccccatcgtcatcgttctccagctcgtgca
cttaggcgatcaccatctcctgcacgccgcagatcacccgctcgacaccgatttccagca
gacagacactggtccccatctgcaggaagacgcagaccacggtccccatctccagtaaga
cgcaggccaaggtccccatctccaggaagacgcaggccaaggtccccatctcctggaaga
cgcaggctacggtctccagcaagacggcggtccccatcacctccccgctcaccgcagttg
aggtcacccaaacgccagaggaattccccaatttccataaaaactcttcctggaaatcgc
cgagcctctccacaacgaaggaggagtactagtccatacagcaggagtccaaatcctcct
cctaggagtttgaatagagacaacaagaagggaacaaatggtgttccctctaaagatgga
gatatgcctcaaaggaaccaagaaaggagatcatatgctgatgatgggaatgacagagaa
atgagcgatcatcgttctccaggctctgaacaccataggtccacaaaatccttgaggtct
cctaccaacaattcagaaagagtctccacagatgataatcctaagaaaaccaggaaacat
ttacccagtcaggacatcacagatgccagtggagacgaggaagaaggcagtcgcgcaaga
gagaatgcacggaaagccaattcgtcgcgcaggaaattaaaggatttctcagctgatcct
gaactaaacaaagtccatgatgatagcttaggcctgggagaaaaatcaccctcaaggtca
cagcaggatggcaaggacatccacagcaaacatgacaatcaactatcagattcatcagaa
gatgggcgtggcagtggaagaaagaaacgccagtttgattctcctgatgattcccttgtg
aaacagcagtcccctagtagagctggaatggatgagactaacaacgagcatgccataggt
tctcatggcactgtcgcagaaaagaattatttggttaaagttgatgaagcttcccaatca
gatggtggaagccctcttcaaaaagctaagaaaagtagcaatcatattgattatcgcagt
tcaggctcagaagaatctgaaaaacacagatcccagtctgagaagcgaaggcataagaag
agtcacaagcataagaggcatcatgatgatagttccgagtcagattctgagtcagatgac
aaggagtccaagaggaggaggagagaagaaaagcggctgcggaaagaggaaaggcgcctt
aggcgtgatgaacgccaccgcagaagggcagaccgtcatgccagtaagcaaaaaatgaat
tatcttggcactccgccttcagatcttgagaaggatcgtgaacctggctcagatgctgat
gcaaggaagaaaggttcgtacaccagcagagaagaatctgaccccaagaaacttgaagtc
gagcttcgacagagggcccttgaatctctcagtgcaaaaaaattgaagcatgttgttact
ccatccccagacgagaaggatcgtgaaccaaattcagatgcagatgttcggaaagaagtt
tcatacactggctga
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