Brachypodium distachyon (stiff brome): 100837139
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Entry
100837139 CDS
T01717
Name
(RefSeq) cell differentiation protein rcd1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100837139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100837139
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100837139
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Roquin_1_2-like_ROQ
Motif
Other DBs
NCBI-GeneID:
100837139
NCBI-ProteinID:
XP_003580537
UniProt:
I1J1R9
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All DBs
Position
5:complement(24342173..24346099)
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AA seq
320 aa
AA seq
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MANLQASLNMHPSFAAAAAASGPPPSPIGGGGGSSAAVAQERNDRKQASVEQLVLDLCDR
ELRENTLLELSKKREVFQDLALLLWHSYGTIAALLQEIVSIYPALSPPTLSPGASNRVCN
ALALLQCVASHPDTRIHFLHAHIPLFLYPFLNTFSKTRPFEYLRLTSLGVIGALVKIDDT
EVIGFLLQTEIIPLCLRTMEMGSELSKTVSTFIVQKIMLDDIGLRYVCATIERFYAVSNV
LGAMVVSLADLPSTRLLKHIIRCYLRLSDNPRACFELQTCLPDMLKDGTFHVSLKDDPTT
RRWLQQLLHNVTASGMAGPP
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctgcaggcttcccttaacatgcacccctccttcgcggcggctgcggcggcc
tcggggccgcccccctctcctatcggtggaggcggcggcagtagtgcagccgtggcgcag
gaacgcaatgacagaaagcaggcgtcggtggagcagctggtgctcgacctctgcgaccgc
gagctgcgcgagaacaccctcctcgagctatccaagaaacgagaggtctttcaagatttg
gccctgcttctgtggcactcttatggcactattgctgcactacttcaggaaattgtgtct
atctaccctgcactttcacccccaactttgtcaccaggtgcatcaaacagagtctgcaac
gcacttgcacttcttcagtgtgttgcatcgcaccctgatacgaggatccacttcttacat
gctcacattccactgttcttgtacccgttcttgaatactttcagcaagacacggcctttt
gagtacttgcggcttaccagtttgggtgtcattggtgctcttgttaagatcgatgatact
gaagttatcggttttctgctgcaaactgaaataattcctctgtgtttgcgcactatggag
atgggcagtgagctatcaaaaaccgtgtctaccttcattgtccaaaagattatgcttgat
gatattggactgcgttacgtttgtgcaaccattgagcgtttctatgccgtgagcaacgtt
ttaggagccatggtagtttcacttgctgatctaccttccaccaggttgctcaagcacatt
atacgatgttacctcaggctgtcagataatcctagagcatgttttgaactgcaaacgtgc
ctccctgacatgctgaaagatgggacattccatgtctctcttaaggatgaccctacaacg
cggcgctggcttcaacaactgctgcataatgtgacagccagtggcatggcaggacctccc
tag
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