Brachypodium distachyon (stiff brome): 100837458
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Entry
100837458 CDS
T01717
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100837458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100837458
03036 Chromosome and associated proteins [BR:
bdi03036
]
100837458
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
100837458
Coactivators
SAGA/TFTC/STAGA complex
100837458
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
100837458
STAGA complex
100837458
TFTC complex
100837458
SAGA complex
100837458
SLIK complex
100837458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_VPS8
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Tricorn_2nd
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
Cytochrom_D1
Beta-prop_ACSF4
RecX_HTH3
PALB2_WD40
DUF4518
SpoVT_C
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
100837458
NCBI-ProteinID:
XP_010239968
UniProt:
I1GVK3
LinkDB
All DBs
Position
1:26475246..26485030
Genome browser
AA seq
678 aa
AA seq
DB search
MRPPGRGASKTLEVLPPRRAPAMEDEEMEKKVQQYLHRKGFRLTELALQEERNRLSTTSL
SDVSLSRSDNDPSRYYDGYSRLRTWAYSSLDQYKHELLRVLYPVFIHCFMDLVAEGHAHE
ARSFFQAFREDHELMHSRDLQKLEGILSPSHLEEMDLARSLRQNKFRIKLCEYSYELLLQ
YLQKTQALVMLGIINERIIFEVSAGQPSLISDDADVVALVGTSKDLAKQINQKEVHWGLL
EDSVEERMEKALSDSDKTEAESKDADTEDNKKKSSEGGKQGGSLKKLKKDKLVGATGKNN
KSETSMVSAAPRVKPELTLPATPVEVEQSVLEDLRNRAQLNNLALPSVSFYTFLNTHNGL
NCTSISNDGSLVVGGFSDSSVKVWDMSKIGQPTKTCSSQGENGSSQGEHLSGTTEGKRPY
TLFQGHSGPVYSAAFSPFGDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPV
GHYFASASHDRTARIWSMDKIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDV
QTGECIRMFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTGRCVSPLAGHNSCVWS
LAFSCEGALLASGSADCTVKLWDVASSTKALKLDDTKGGSTNRLRLLKALPTKSSPVYNL
RFSRRNLLFAAGALSLGS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctcctggtagaggtgcttcaaaaaccctagaggtgcttcctccccggcgcgcg
ccagctatggaggacgaggagatggagaagaaggtgcagcagtacctgcaccgcaagggc
ttccgcctcacggagctcgcgctgcaggaggagcgcaatcgcctctctaccacctccctc
tccgacgtctcgctctccaggtcggataacgatccatcaagatactatgatggttacagt
aggctaagaacatgggcatatagttctctggatcaatacaagcatgaattactccgtgtc
ctttatccagtgtttatacattgcttcatggatctagtggcagagggacatgcacatgaa
gctcgttcatttttccaagcatttcgggaagatcatgaactgatgcattcaagggatctc
cagaaactggaaggcattctttctccttcgcatctggaggaaatggatctggctcgatct
ttaaggcaaaataaattcagaattaaattatgtgagtattcatatgaattgcttcttcag
tatctccagaaaacacaagctcttgtgatgcttggaataatcaatgaaaggataattttt
gaagtatctgctgggcaaccttcattgatctctgatgatgcggatgtagttgctctggtc
ggaaccagtaaggacttggcaaaacagataaatcagaaggaagtgcattgggggttgctt
gaagattcagtcgaggaacgtatggagaaggcactctcagattctgataaaactgaagcg
gaaagcaaggatgcagacacagaagataacaagaaaaaatcttcagaaggtggaaagcag
ggtggttctcttaaaaagctcaaaaaggataagcttgttggtgcaacagggaaaaacaac
aaatctgaaacgagcatggtttctgcggcacctcgtgtgaaaccagagctaacccttcca
gcgacgcctgttgaagttgaacaatcagttctcgaggacttgcgaaatcgtgcacagttg
aataacttggcattaccatctgttagcttctacacattccttaatacacataatggatta
aattgcacgtcgatttcaaacgatggatcattggttgttggtgggttctcagactcatca
gtaaaggtctgggatatgtcaaagattggtcagccaaccaaaacatgcagttcacaagga
gagaatggatcttcacagggtgagcatttatcaggcacaactgaggggaaaagaccatat
acgttattccaaggccattctgggccagtttattccgctgcctttagtccatttggggat
tttctcttgtcatcatcttcagactcaacaattagactatggagtaccaagttgaacgcc
aatctcgtttgttacaaaggacacaactacccagtttgggatgtccaatttagtccagtc
ggccattactttgccagtgcgtcgcatgacaggaccgctcgtatctggtcaatggataaa
atccaacctttgcgaataatggctggccatctttctgatgttgattgtgtacaatggcat
gtaaactgtaactacattgccaccggctctagtgataaaactgtaagactatgggatgtt
caaactggtgaatgtatacggatgtttattggtcataggagtatggttttgtcgttggca
atgtctcctgatggacggtacatggcctctggagatgaagatggaaccatcatgatgtgg
gatctctctactggtcgctgcgtttcgccactagcaggtcacaactcttgtgtatggtca
cttgctttcagctgcgaaggagcattgcttgcatctggatcagcagattgcactgttaaa
ctctgggatgttgcatccagcacaaaggccctgaagttggatgacaccaaaggtggttca
acgaaccgactgaggttgctgaaagctctccctacaaaatcttctcctgtttacaacttg
cggttctctcggaggaatctcttatttgctgctggtgctctctcgctaggctcctaa
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