Brachypodium distachyon (stiff brome): 100837627
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Entry
100837627 CDS
T01717
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100837627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100837627
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100837627
Spliceosome [BR:
bdi03041
]
Complex C
Other components
Step II factors
100837627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
IBR_1
zf-RING_UBOX
RRM_1
ABC_tran
AAA_22
AAA_19
zf-C3HC4
zf-RING_5
KH_SLS1_1
zf-C3HC4_2
HA2_N
gp37_trimer
Arc_MA
ResIII
AAA_29
Motif
Other DBs
NCBI-GeneID:
100837627
NCBI-ProteinID:
XP_014752303
UniProt:
A0A0Q3JBE0
LinkDB
All DBs
Position
1:complement(17111443..17123731)
Genome browser
AA seq
1683 aa
AA seq
DB search
MSRSYGCRPFRPPDWDAPPHGRYHQRQPPPRQFLVILLRAGANLSAPPATEVDALVTGLG
SPAPDSLSVSSSGRQAARLLFRSLPAAAAAVRELWSLRLEGFHLLTPHLPDRALAAHAFP
VIASLFAAHVSRLLDTDLVSRCAARSSELATAIQSVKQRLRAHNRLRDFDRLDLEKKTLE
AEKELVGAKIAEYKAAMSSIRHAMLRVTDDDEEEESVDEGVDVFGIGEDKDVDFARLHMM
MLRECRRLNEGLPIYAYRRKILNHIFSNQVMVLIGETGSGKSTQLVQFLADSGLVANGSI
VCTQPRKIAAISLAHRVDEESNGCYEDNFVLSYSTFLNSQDFSSKIIFCTDSCLLHHCMN
DAGFDGISYIIVDEAHERSLNTDLLLALIKKKLLDRLDLRLIIMSATADADRLADYFYGC
QTFHVKGRNFPVEIKYVPDVSVEASFNSVPNSLGGARAAVSYVNDVVRLVSMIHKNEEEG
AVLAFLTSQLEVEWACENFSDTSAMVLPMHGKLSHVEQSRVFKSYPGKRKIIFCTNMAET
SLTIKEVKYVVDSGLAKESRFVPSSGLNVLKVNWISQSSANQRAGRAGRTGAGKCYRLYS
ESDFNMMEVHQEPEIRKVHLGTAVLRILALGVKDAQNFEYVDAPNPEAINMAVKNLEQLG
AVKCRLNCFELTDTGRHLVKLGIEPRLGKIMLDCFRSDLKKEGVVLAAVMANSSSIFCRV
GTDEEKHKADLQKVRLCHQDGDLFTLLAVYKKWEDGHENRNTWCWENSINAKTMRRCQET
ISELENCLKHELNIIVPSYWCWNPEAPTEHDKKLKKIILSSLTGNLAMFLGHERSGYQVI
STDQVVNLHPSCSLLNYGIKPEWVVFTEILSVPNQYLVCVTAVDHEALYTIHPMPFIQQL
EKHKLQIKIISGLGHHVLARFCGKSGQNQQKIISHLKEECRDERITVEIDFENNEVVLFA
TEQDMEKVFSIVNGALECEAKMLKNECLERNLFPGRPGSSPLALFGSGAEIKHLELEKRF
LSVEVLHQNARDINDKELILLVDSLISGIANFHKSAGNFRIASDENKWGKFTFLKPEDAE
YAVSKLNGIEFHGSSLKVVPICSSDNRGLPFPAVRARLSWPRNPSRARAHGIRLLGLRET
PIASPSISACEEALIREISPFMPNKSFPGQNFRVEVFPPEENNPMTRATVTFDGSLYREA
ARALDHLNGSILPCCQPWQIIQCNHVFHSTLSCPVRVYNVISQEVASLLESFRSQKGVSY
NFEKTENGIFRVKLTANATKTIADLRRPLEILMKGKTINHPDLTLSAVQLLLSRDGVAHL
KSIEQETETYILYDRQSLTIKVFGDQDQMATAETKLVHALSQLLEKKPLEIRLRGHNLPP
DLMKKTVENFGVNLEGFNKEMPAVKVDLHKHRHLLKVWGSKEDKQRVEGMISELIMSVKH
NALVQLPSENVAGNKEDQKRVDDSELSKDACPICLCEAEDPFKLESCGHMFCRACLVDQC
DSATKSHDGFPICCLKTGCKKPFLIVDLKHLVSNEKLEDLFRASLRAFVASRSGMYRFCS
TPDCQSIYQVAALNAETKPFVCGACFVEICTKCHLEYHPFMSCKDYKQYKEDPDATLLEW
RKGKGNVKNCPSCGYTIEKADGCNHVECRCGSHICWTCLENFRSSEECYGHLRSVHQSFV
DIV
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatcctacggctgccgccccttccgcccgccggactgggacgcgccgcctcac
ggccgctaccaccagcgccagccgcccccgcggcagttcctcgtcatcctcctccgcgcg
ggcgccaacctctccgccccgcccgccacggaggtcgacgccctcgtcaccggcctcggg
tcgcccgcccccgacagcctctccgtctcctcctccggccgccaggccgcccggctcctg
ttccgctccctcccggcggccgcggccgccgtgcgcgagctctggtcgctccgcctcgag
gggttccacctcctcaccccgcacctccccgaccgcgccctcgctgcccacgcgttcccc
gtcatcgcctctctcttcgccgcccacgtctcccgcctcctcgacaccgacctcgtctca
cgttgcgccgcccgctcctcggagctcgccaccgccatccagtctgtgaaacagcgtctg
cgtgcacacaataggcttcgtgactttgatcggctcgatctcgagaagaaaacactggag
gccgagaaggaattggtaggcgccaaaatcgccgagtacaaggcggcgatgagttcgata
aggcatgccatgctacgtgtgacagatgatgatgaggaggaggagagcgtggatgaaggg
gtggacgtgttcgggattggggaagacaaggatgtggactttgcgaggttgcacatgatg
atgctgcgcgagtgcaggaggctcaatgaggggttaccaatctatgcgtaccgcagaaag
attctcaatcacattttcagtaaccaggttatggtcttaattggggaaactggttctgga
aaaagcacacaattagttcagtttcttgctgactcaggtcttgtggctaatggctccatt
gtctgtactcaacctcgaaaaattgctgctatatcgttggcacacagagtagatgaagaa
agcaatggttgctacgaggacaattttgtgttgtcatattcaacctttttaaattctcaa
gacttcagttcaaagatcatattttgcacagatagttgtcttttacatcactgcatgaac
gatgcggggtttgatggcatttcatatatcattgttgatgaagctcatgaaagaagcttg
aacactgatcttctcttagctctgatcaagaagaagctccttgataggttggatttgcgt
ctcattataatgtctgcaactgctgatgctgatagacttgctgactacttctatggctgt
caaacattccatgttaaagggcgaaattttcctgttgaaattaaatatgtcccagatgta
tcagtggaggcttccttcaattctgtgccaaactctttgggtggtgctcgtgcagctgtt
tcttatgtcaatgatgttgtaagactggtaagcatgattcacaagaatgaagaagagggt
gctgtccttgctttcttgacatctcagctggaagttgaatgggcttgtgaaaacttcagt
gacacaagtgccatggtacttcctatgcatggaaagctttcccatgtagaacagagccgt
gttttcaaaagctatcctggaaagagaaaaattatcttctgcacgaatatggctgaaacg
tcactgaccataaaagaagtgaagtatgttgttgattctggactggccaaggagagcagg
tttgtgcccagtagtggtcttaatgtattgaaagtcaattggatttcccaaagttccgct
aatcaacgtgctggccgggcaggtcgaactggagctgggaagtgttacaggctttactct
gaatccgacttcaatatgatggaagtgcatcaggaacctgagatcaggaaagttcatctc
ggcactgccgttcttagaatacttgctttgggtgttaaagatgcacagaattttgagtat
gttgatgccccaaatccagaagcaataaatatggctgtgaagaaccttgaacaattgggt
gctgtcaaatgtagacttaattgctttgagttgactgatactggacgccaccttgtcaaa
ttgggaattgagccaaggcttgggaaaattatgcttgattgcttccgttctgatttgaag
aaagaaggtgtagttctagctgctgttatggcaaattctagcagcatattttgcagagtg
ggcactgatgaggagaaacataaagctgaccttcagaaggtccgattgtgtcaccaagat
ggagatttgttcactttactggctgtttataagaaatgggaggatgggcatgaaaacagg
aatacgtggtgctgggagaacagcatcaacgccaagaccatgaggaggtgccaggaaact
atatcagaacttgaaaactgtctaaagcatgaactgaacattattgtcccaagctattgg
tgttggaatcccgaggctcccacagaacatgataagaagctaaagaaaattatcctatca
tctcttacaggcaatcttgctatgttcttaggacatgaaaggtctggttaccaggtgatt
tcgacagatcaggttgtgaaccttcatccctcatgctcgttgctcaattatggcatcaag
ccagagtgggtggtgtttacagaaatcttgtcagtcccaaatcaatatttggtatgtgta
actgctgttgaccatgaggccctgtatacaattcaccccatgcctttcattcagcaactg
gagaaacataaattgcagataaaaataattagtgggcttggtcatcacgtgctggcaaga
ttttgtggaaaatctggtcaaaaccagcagaagattatttcacatctcaaggaagaatgc
agggatgagcgaataactgttgaaattgacttcgaaaacaacgaagttgtgttatttgct
acagaacaggacatggaaaaggtcttctccattgttaatggtgctttggaatgtgaagct
aagatgttgaagaatgagtgcctcgaaagaaatttatttcctgggaggcctgggagttct
cctcttgcactatttggctcgggtgctgaaatcaaacatttggaacttgagaagaggttt
ctatcggtagaggttctccatcaaaatgctcgtgatatcaatgacaaggagctcattttg
ttggtggatagtctgatctctggtatcgctaattttcataaatctgctggaaattttcgg
atagcctcagatgaaaacaaatgggggaaatttactttcctgaaacctgaagatgctgag
tatgctgtctcgaaactgaacggaatagaatttcatggttcctcattaaaagtggttcca
atatgttcttctgataatcgaggattaccatttcctgcggttagagccagattatcttgg
ccacgtaacccaagcagggcacgtgcacatggtatccgtttgctcgggctcagggaaaca
cccatagctagcccctcgatttctgcttgtgaagaagcactgattagagaaatttctcca
ttcatgccaaacaagagttttcctggacaaaatttccgtgttgaggtgttccctccagag
gaaaacaatccaatgacaagagcaactgtaacttttgatggaagtctttatcgtgaggct
gcaagagcactggaccatcttaatggaagcattcttccttgttgtcaaccttggcagata
atacagtgcaatcatgtgtttcatagtactctgtcctgtccggtacgtgtttacaatgtt
atcagccaggaagttgcttcgctgcttgagagcttccgaagccaaaaaggcgtgtcttac
aattttgaaaagactgagaatggtatctttcgtgtaaagctcactgcaaatgccacaaaa
acaatagcagatttgagaaggcctcttgagattttgatgaaaggcaaaaccataaaccac
cctgatctgacattaagtgcagttcagctgctcttgtcccgtgatggtgtagcacattta
aaatcaattgaacaagaaactgagacttacattttatacgacaggcaaagtctaactatc
aaagtttttggagaccaagatcagatggccacagcggagacaaaattggttcatgcactt
tcacaactccttgaaaagaagcctctggaaattcgtcttcgtggccataacctccctcca
gacttgatgaagaaaacagtggaaaactttggagttaacttggaaggatttaataaagag
atgcctgcggtcaaggttgatttacataaacaccgtcatttacttaaagtttggggcagt
aaagaggataagcaaagggtggaagggatgatctctgagttgataatgtctgttaaacac
aatgccctggttcaacttccatcagagaatgttgcaggcaataaagaagatcagaaaagg
gtggatgacagtgagctgtcaaaggatgcatgccctatttgcttgtgtgaggcggaagat
ccttttaagcttgaatcatgtgggcatatgttttgtcgggcttgtttggtggatcagtgt
gattcagccacgaaatcgcatgatgggttccctatttgttgtctcaaaactgggtgcaag
aagccctttctcattgttgatctgaagcaccttgtgtcaaatgagaagctggaggaccta
ttcagagcttccttgagggcatttgttgcatctagatcaggtatgtaccgcttctgctcg
acacctgattgccaatccatctaccaagtggcagctctaaatgcggaaaccaaacctttt
gtctgtggagcttgcttcgtggagatctgcaccaagtgccatctcgagtatcatcctttc
atgtcctgcaaggattacaaacaatacaaggaagacccagatgcaacactgcttgaatgg
cgcaaggggaaggggaatgtgaagaactgcccttcctgtggatacacaattgagaaagct
gatggctgcaaccatgttgagtgcaggtgcggcagccatatttgctggacatgcttggag
aacttcagaagcagtgaggaatgttatggccatctcaggtctgtgcaccaatcctttgtg
gacattgtgtag
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