Brachypodium distachyon (stiff brome): 100837770
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Entry
100837770 CDS
T01717
Name
(RefSeq) protein RST1 isoform X1
KO
K27498
focadhesin
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100837770
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100837770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3730
DUF1543
Motif
Other DBs
NCBI-GeneID:
100837770
NCBI-ProteinID:
XP_014754965
UniProt:
I1HCE0
LinkDB
All DBs
Position
2:complement(3013151..3028611)
Genome browser
AA seq
1833 aa
AA seq
DB search
MASSSSGAAAFSRLVDRTRVPDPTLQRHAVAAFFRHLLTLPPPLPAAAHDGISSLLASPH
AAVAAHASASLARLAASRADLLAPDHALPFLLAPLSASPSPRLAACLVKAVAAVVSCVLR
SGPAGSRFAPYNHPFVQALASGADGARAELSRQAARMVAEGVHGVVGFLRPFVMFAVVRK
GDAAFARDLIGALAAAAATPAANSYDAVPVLKLLGESLLHFGRGDGEEARLWLSSVESLV
DAYVILLRKLAHAQRPSYDAQASSVELIETLLSQCSLHHQLVGMACGVLGLSKYLFVVQK
DLGLCYLPEISAVLSSLSCILSGLEFEHEQLAGLKLLAFLIEWRLENALETNEAVNHFSE
GLLCALPVINLVISPSRSVKAVASHVLSRFSLLVPELPTSRSSEQQDISLFYHISKPTCI
LPKLVHHLWFQSSSSGFFYTKYAISKGLPESSGYYSEANCWTDQIKEYLSVLGKEKLTLD
GSSSKTMSSVAISSLVSSVVSVLVMHPKLGTSAAQSLGILGASDPKLGMPSLVVILFYCK
ILYSNGNFSTNSLLSLLESLPSLATHGFVLPLALQLISPLLKKDAKSVLYAFAVRLLCKI
WIITDWAFPNLQGILDSEAVSNFNTNREVFTSIAASVRDVCKQNPDRGVDLILSVSSCIE
SRDSVVQALGLESLSYLCEADVVDFYTAWKVISKELLDYSIDPTVSHGLCILLRWGAMDA
EAYYETSKNLIQILWCIATYKKSNADRLWIKARGTAFHSLSQYKVSLIQDAVPDFWRRNY
ECFTNEHNLEVLGAMENFQAEIIRFEHINRRRMTTDKRTTVHKFEKLLDLLPQAVFKETA
HHKLPGAALLTIKFFPEDILHEGKSKDLPRLHAAYEQALVEMAESIYISRNIMVALLALH
SWKSFVSHWMQAVVALLDIKESSKLNKPLKAANDIFKILCKCVPVSNPRVAVNIILAIGA
LCMVIPPTAHLVVSSASDFLLEWLLQYEHEHQQWSAAISLGLIFNCFHPTDKKSKFQVIS
ALFEVISKTDRCLVKGACGLGLGYACQGLLTRADSAADSELEAATKINERASVEEILHTL
TTSLVTLCPSSFYSLKKLSICGIVSEGMGENYDSFDDDPWAIAGLVLGLGNSVVALYRLG
AYEAVVEVKNILISWIPVVDSSSVLFDETNSVSLCMGSCLALPSVIAFCQRVELLNDDLD
ALFNRYTSLANELLNLKKSGTIFQSLLMAICIGAGSFLSCILNDGVHPMKFTDVKTFLDT
LKHIYTHPYPPLVHLGGMFGAVNAFGAAAGDLTGMCWPSINPQINHEKESSLVRGPVLTS
PAGETLSTSMIHEIFLLAKDAEDNNIQNYAAWAISFLRSRWLQKNQNLHDDDYSQRNPID
SSQSISFSAESLVWNLSLWLRDLNFEKLDDMVPVSTITTVVKCLSKAPRLPTIDWGAIVR
RCMKVEAHIPHRSTNHRDPKLLREECLYFSLAHADHLSPLLQFLDDLTDLPRFRRLEINA
QSVLLQYLSHLLKLFSESRLEKLFVDLTDYFCSPTSSYLDYSSEQRSLLRLSFWKGIRKC
LVEVVSEESGSFSYIKKGIECLLSLLSLCKDGQPEFVDEWSAAIKCLGAAQKSWLGDMLQ
VHNTTSLSEGGHVDVAKKIIIRARLCSTGCVSAHELGNIKTTILSTKADGLWWNVLVEVA
AAVYSADNGIKKQWLLDALDISCVTAHPSTALRFVSLLCGSCCIYMPLLIVNPTNVLSDL
PVTLPSFLSSSIWDDLRNSVADKLWLLTTRIYTWAEKLTRGEALPCHDHIHGSEAENISF
LVNMLRSTCIAVEDHLAVDKQLKLANLEALSGS
NT seq
5502 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctcgtccggcgccgcggccttctcccgcctcgtagaccgcacccgcgtc
ccggaccccaccctgcagcgccacgccgtcgcggccttcttccgccacctcctcacgctg
cccccgcccctccccgccgccgcccacgacggcatctcctccctcctcgcctcgccccac
gccgccgtcgccgcccacgcctccgcgtcgctcgcccgcctcgccgcctcccgcgccgac
ctcctcgcccctgaccacgccctcccgttcctcctcgcgcccctgtccgcctccccgtct
ccccgcctcgccgcgtgcctcgtcaaggccgtcgccgcggtagtttcctgcgtcctccgc
tctggccccgccggctcacgcttcgctccctacaaccaccccttcgtccaggctctcgcg
tcgggggctgacggcgctcgcgcggagctgtcgcggcaggcggccaggatggtcgccgag
ggggtccacggggtggtggggttcctgaggccgttcgtgatgttcgccgtggtgaggaaa
ggggacgccgcgtttgccagggatttgatcggcgcgctggccgctgcggcggccacccca
gcggcaaattcttatgatgcggtcccggtgctgaaattgctcggcgagagcttgctgcat
tttggccgcggggatggagaggaagcgcggctctggcttagttctgtggagagcttagtg
gatgcttatgtgatattgttgagaaagttggctcatgctcaaaggccatcctatgatgcc
caagcaagtagtgtggaattgatagaaacacttctgtcacaatgctcacttcatcaccaa
cttgttggaatggcctgtggagttcttgggttatcaaaatatttgtttgtggtgcaaaag
gaccttggtttatgctatctgcccgaaatttctgctgtcctcagttctctttcttgcatt
ctcagtgggctggagtttgaacatgagcaactggctggattgaaacttctggcctttttg
attgagtggagacttgaaaatgcgctcgaaacgaatgaagcagtaaatcacttcagcgag
gggcttctctgtgctctgccagtcatcaaccttgttatttctccatcgagatctgtcaaa
gcagtggcatcgcatgtcttgtcaagatttagtttgcttgttccagagttacccacttct
cgttcatcggagcaacaagacatttccttgttttaccatataagcaaacctacctgtatc
cttcctaaacttgtacatcatctatggtttcagtcatcttcatcaggtttcttttatacg
aagtatgcaattagcaaggggttgcctgagtcttctgggtactattcggaagctaactgc
tggacagaccaaataaaggagtatctgtcagtccttggcaaagaaaagcttacattggat
ggctcatcttcaaagacgatgtcatcagtagcaatatcatcgcttgtaagttctgtagta
tcagttttggtgatgcatccaaaacttggtacttctgctgctcagtccttgggtattctt
ggcgcttcagatccgaaactgggaatgccatcgctggtggttatcctcttctattgcaag
attctgtacagcaatggtaacttctcaacgaatagcttgctcagtttgctagagtcactg
ccatcacttgctacacatggttttgtgcttccactggctctgcaactgatatcaccattg
cttaaaaaggatgcaaaatcggttctatatgcttttgctgttcgattgctttgcaagata
tggattatcacagattgggcatttccaaacttacaaggaatccttgattctgaagcagtg
tctaatttcaatactaacagagaagtttttacaagtattgctgcatcagtgcgtgatgtt
tgcaagcagaacccagatagaggcgtcgatctcatattatctgtctcgtcttgtattgag
agccgtgattctgtagttcaagctcttggcctggaaagcctctcctatctctgtgaggca
gacgtggtagatttctatactgcctggaaagttatatcaaaggagctgctagattattca
attgaccccacagtttcacatggcttatgtattctgttgaggtggggagccatggatgct
gaagcatattatgaaacatcaaagaacttgatacaaatattatggtgcattgctacatat
aagaaaagtaatgctgaccgtctttggattaaagcaagaggaactgcttttcactccttg
tcccagtacaaggtctcacttattcaagatgctgttcctgatttctggagaagaaactat
gagtgcttcactaatgaacacaatctagaagttctcggagccatggagaactttcaagct
gagattatccgatttgagcacataaatcgccgtaggatgactacagataagaggacaaca
gttcacaaatttgagaagctattggaccttctccctcaagctgtgtttaaagaaacggca
catcataagttgcctggtgcagcccttttaaccatcaaatttttcccagaggatatcctt
catgaagggaaatctaaggatttacctaggttgcatgctgcgtatgagcaagcattagtg
gagatggctgagtctatttatatatcaagaaacataatggtagctcttcttgcgttgcat
tcgtggaaatcatttgtttcccattggatgcaggcagttgtagctttgcttgacatcaaa
gaatcttcgaagttgaacaaacctttaaaagcagctaacgatatatttaagattctgtgc
aagtgtgttcctgtatctaatcctagagttgctgttaacattattcttgcaattggagcg
ctgtgcatggttattcctccaactgcccatctagtagtatcatctgcatctgattttctt
ttggagtggttactccaatatgagcatgagcaccaacagtggtctgcagctatctctctg
gggctaatattcaattgttttcatcccacggacaaaaagagcaagtttcaggttatcagt
gcactctttgaggttatctcaaaaactgatcgttgtcttgtaaaaggagcttgtggactg
ggattaggttatgcttgccaaggtcttttaaccagagcagatagtgcagctgattcagaa
ttggaagcagctacaaaaatcaatgaacgtgcatcagttgaagaaattcttcacacactg
actacttcattagttacgctatgtccatcctcattttattctctcaagaaactaagtatt
tgtggaatagtctcagaagggatgggagaaaattatgatagcttcgatgatgatccttgg
gctattgcaggacttgttcttggtctgggaaactcagttgttgctttatataggcttgga
gcttatgaagctgttgttgaagtcaagaatatattgatatcatggataccagttgttgat
tcaagctcagtattatttgatgaaacaaattcagtatcactgtgtatgggctcttgtctt
gctcttccttctgtcatagcattttgccagagagtggagttactgaatgatgatttggat
gctctgttcaatcgctacacttctttagctaatgaactcctgaacctcaagaaatctgga
acaatcttccagagtttgttgatggctatctgtattggtgctggatctttcttgtcttgc
atattgaatgatggagttcatcctatgaaatttactgatgtgaaaacatttcttgacact
cttaaacatatatacacccatccgtatcctcctcttgtccatttagggggcatgtttggt
gctgtcaacgcttttggtgcagctgctggagacctcactgggatgtgttggccatccata
aatccgcagataaatcatgagaaggagtcttctttggtgcgaggtcctgtgctcacaagt
cctgctggcgagactctttcgacatcaatgattcatgaaatatttcttcttgccaaggac
gctgaggataataacatacaaaactatgctgcatgggctatatcatttctaagaagcagg
tggttacaaaagaatcagaatcttcatgatgacgattactcccaaagaaatcccattgat
tccagtcaatcaatcagtttttctgctgaaagcttagtttggaacttaagtctctggttg
agggaccttaacttcgaaaagcttgatgatatggtgccagtaagtactattacaacagtt
gtgaaatgcctctctaaagctcctagattgccaactatagattggggggctattgtacgg
cggtgcatgaaagttgaggcacatattcctcataggtcaactaatcatcgagatcctaaa
ttattaagggaagaatgcctatatttttctttagctcatgctgatcatctcagtcccctt
ctgcaatttttggatgatctgacagacctacccagattcaggagattagaaataaatgct
cagtctgttttgcttcaatatttgtcacacctattgaagctcttctctgaatcaagattg
gaaaaactctttgttgatttaaccgactacttctgttcccccacatcgtcatacttggat
tactcctctgagcagagaagtttgttaagattgtcgttctggaaaggcattcgcaagtgc
ctggtggaggtggtttctgaagagtctggtagtttctcttatattaaaaaaggcatcgaa
tgcttgctatctctcttgagtctctgtaaagatggccaacctgaattcgtggatgagtgg
tctgctgctatcaagtgtcttggtgctgctcagaaaagttggctgggtgatatgctgcag
gtgcacaataccacatccttgagtgaaggtggacatgttgatgtggccaagaaaattatc
atcagagcaaggttgtgttctaccggttgtgtttctgcacatgagcttgggaacataaag
actaccatattgagtacaaaagctgatggtctctggtggaacgtacttgttgaggttgct
gcagctgtatactctgctgacaatggtataaagaaacagtggcttctggatgcattagat
atcagctgtgttacagctcatccctccacggcactgcgttttgttagcctgctatgtggt
agctgctgcatctatatgccacttctcattgttaatccaacaaatgtgctgagtgatttg
ccagtcaccctgccttcctttctctccagcagcatttgggatgatcttagaaactctgtc
gctgataagctgtggttgttgaccactcgcatctacacttgggcagaaaaattgactcgt
ggagaggcccttccttgccatgatcatattcatggaagtgaagctgagaacataagtttt
cttgtgaacatgctgcgctctacttgcattgcggtggaagatcacttggctgtagataag
cagctaaagcttgcaaatctggaagcactatcaggatcataa
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integrated database retrieval system
