Brachypodium distachyon (stiff brome): 100837794
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Entry
100837794 CDS
T01717
Name
(RefSeq) uncharacterized protein LOC100837794 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100837794
Spliceosome [BR:
bdi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
100837794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
100837794
NCBI-ProteinID:
XP_010235098
UniProt:
I1I6R6
LinkDB
All DBs
Position
3:37152195..37165484
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AA seq
1155 aa
AA seq
DB search
MLGPPEKVDMEVEPAEAAAALVALASEPSPSQLDVFKNRIHLLRDGNTSDFDAWVSLIGS
VEETNANDIEVISLVYRSFLLEFPLCHGYWIKYAAHKARLCTYEDVVDVYEQAVQAVPHS
VDIWVSYCGFGMSVHEDPALVRRLFERAMSLVSRDYLCYHLWDKYIEFENSQKQLIQLAT
IYINMLKYPTKKLHKYYGSFKKLVTSLEQEFTNCGAEISSENLHTSEVMEAEESERDISI
KIAGLFDGGGHLKAESLRQYLLTGDRLYQRSSKIDEEICGFEASIRRPFFHVKPLDDDQL
ENWNLYLDFVEKNGDFDWAVKLYERCLIPCANYSEFWIRYAEYVDAKGGREIANYALGRA
SSCFVKGVPTFSTYHAMFKEQIGDAPGARALFLEGSSDFTSDSCMNINRVANMEKRMGNT
KAATEIYENAIVDAMQRQNIEVVADLYTNFAQFVYAATRSISEAKEVFVKGIKQAPCKPL
IKGFIQFISTYGGPTEIPLLDSVISDAVTPGSDVSTALSPEDREDISLLFLKFVDLYGGV
QEVRKAWARHSKLCPHNTRNLSQWYCTIDSNKRRITEFLRVAHDHSPEGMTTLKQSSKSD
TCSWQVDKEVGLQVDKNAVDSGKRQGDAGEQNIVGSVDVHQQVGDTAQECIDMAHSQHIL
DNDGAAKSCPSVNEEAPQAESCNCDSPSKSIADDKQIDAQDEIKTTELSAIDHPGTVCSR
SDSPSGTSLLEGGIPSNQTPIFPELEEKHEEIQVKVETENDVSVSDVKPEKSSDNQDATH
CDRVVSVLDQDHIQSSQTEDQSVSAKPSSSEMATTQATTCSQLAPSNAVPAQAPLQQQMD
SSQTNQPVNLFLAGQNMQQMQQQGLAYAIPHNVQISSQTQAQLFAQPNQGNQQYLQMMQG
YESQMWQYYQQQLYYLQAQHNQQIQCLQQQQLPTEQLQQNYMQQVQQLNQQMVLWQQQVQ
QQQQQQAQPVQQQSNIAQGQYHPSMDTKHEHNKLESQIDHQSQQFQQQQQLLYFQQQQQM
YLMQQQQQMYQQQQQQQQQLMQQQQYLSQMPQQEQDMVQQQQQQLFEQQQKQMVVLQQQQ
QQFVQQQMQQYLQQQANQQGFKDQNYELNPQDAKKRQMEHGQQSEASQSDGSKLRSGEQS
ELSYPSTPQSQRSNY
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgctagggccgccggagaaggtggacatggaggtggagccggcggaggctgcggctgcg
ctcgtggccttggcgtcggagccctctccgtcgcagctcgatgttttcaagaacagaatt
catttattgcgtgatggaaacacgagtgattttgatgcttgggtatctttaataggttct
gtggaggaaactaatgctaatgacatagaggttattagcttggtctaccgtagcttctta
ctggaatttcctttgtgccacggctactggatcaaatatgcagctcacaaagcacggtta
tgcacatatgaagatgtggtggatgtttatgaacaagccgtccaagcagttcctcactct
gtcgatatttgggtcagttactgtggatttggtatgagtgtgcatgaagaccctgctctt
gttagaaggttatttgagagggccatgtctcttgtttcaagggattacttgtgttatcac
ctttgggataagtacatagaatttgagaattcgcagaagcagctgattcagcttgctaca
atttatattaacatgttgaaatatcccacaaagaagctgcacaagtattacggaagtttt
aagaagttggtaacatcattggagcaagagtttacaaactgcggtgctgaaatatcatca
gaaaatctacatacttctgaagtgatggaagctgaggaatctgaacgggatatctcgatt
aaaattgctggcttatttgacggaggtgggcatcttaaggccgaatcattgaggcagtac
ttattaactggggaccgtctataccaaaggtccagtaaaattgatgaagaaatatgtggc
tttgaggcatccattagaaggcctttttttcatgtcaagccacttgatgatgaccaactt
gagaactggaacctgtatcttgactttgttgagaagaatggcgattttgactgggctgta
aaactttatgagaggtgcttgatcccttgtgctaattattcggagttttggattcgctac
gctgaatatgtggatgccaaaggtggccgagagattgcaaactatgctcttggtcgagca
tcgtcgtgttttgtgaagggagtcccaactttcagcacgtaccatgcaatgttcaaagag
caaatcggtgatgcaccaggtgctcgtgctctttttcttgaaggaagcagtgatttcact
tcagattcctgcatgaacattaatagagtggccaacatggagaaacgcatgggaaatact
aaagcagctactgagatatatgagaatgcaattgtggatgccatgcaaaggcagaacatt
gaagtagttgctgacttgtacactaattttgcacagtttgtatatgcggcaactcgtagc
atttctgaagctaaagaagtctttgtcaagggaataaaacaggcaccctgtaaacctttg
attaaaggattcatacagttcattagtacatatggaggacctacagaaatacctcttctt
gattctgttatttctgatgccgtgactcctggatctgatgtatcaacagctttaagccct
gaagatcgtgaagatatctcattgttgtttttgaagtttgttgacctctacggtggtgtt
caagaagtcagaaaggcatgggctcgccacagcaaactttgtcctcataacacaaggaac
ctgtcgcagtggtattgtacaattgatagtaacaagaggagaataactgaatttctgagg
gttgctcatgaccatagtccagaaggtatgactacattgaaacagtcatccaaaagtgac
acttgttcttggcaagttgataaagaagttggtttgcaagtggacaagaatgccgtggat
tcaggaaaacgacagggagatgcaggtgagcagaacatagtagggagtgttgatgtgcac
cagcaggttggcgatacagctcaggaatgcattgacatggctcacagtcaacatattttg
gacaatgacggggcagcaaaatcttgcccttctgtaaatgaggaagcccctcaagctgaa
tcatgtaattgcgattctccttcaaaatcaattgctgatgacaagcagattgatgctcag
gacgagattaagaccactgagctatctgcaattgatcatccaggaacagtatgctcaaga
tccgattcgccatctgggacaagcttactcgaaggtggaattccttccaatcaaactcca
atatttcccgaattagaggaaaaacatgaggaaatccaggtaaaggtggaaacagagaat
gatgtgtctgtcagtgatgtgaagccagaaaagtctagtgataatcaagatgcaactcat
tgtgatagggtagtctctgtactcgatcaagatcatattcaatcttcacagacagaagat
cagtcagtcagtgcaaaaccttccagctcagaaatggcaacaacacaagcgaccacatgt
tctcaattagctcccagcaatgcagtgcctgctcaagctccacttcagcaacagatggat
agttctcaaacgaaccaacctgttaacctttttttggctggacaaaacatgcagcagatg
cagcaacaagggcttgcttatgcaattcctcataatgttcaaatatcctcacaaactcaa
gctcaactctttgctcaacctaatcagggaaaccaacagtacctccaaatgatgcaaggg
tatgaatctcagatgtggcaatattaccagcaacagctgtattacctgcaggctcagcat
aatcagcagatccagtgtctgcaacagcagcagcttccaactgagcagctccagcaaaat
tatatgcagcaggtacaacaactgaaccagcaaatggttctttggcagcaacaggtgcag
cagcagcaacaacaacaagcacaacctgttcagcaacagtctaatatagcacagggtcag
tatcacccttcaatggatactaaacatgaacacaataaactggaatctcaaattgatcat
caaagccagcaattccagcagcagcagcagctcctttatttccagcagcagcagcagatg
tatcttatgcaacagcaacagcagatgtatcaacagcagcaacagcagcagcagcaatta
atgcagcagcaacagtatctctcacagatgccgcagcaagaacaagacatggtacaacag
cagcagcagcagctttttgagcaacaacagaagcagatggtagttctgcagcaacagcag
caacagtttgtccaacaacagatgcagcaatatctgcaacagcaagcaaaccaacaaggg
ttcaaggatcagaattacgagttaaacccacaggatgcaaagaagaggcaaatggagcat
ggtcaacaatccgaagcatcacagagtgatggttccaaattgcggagtggtgagcaatct
gagttgtcctacccatcaactccacagtctcagcgctccaactattga
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integrated database retrieval system
