Brachypodium distachyon (stiff brome): 100837853
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Entry
100837853 CDS
T01717
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100837853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100837853
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100837853
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100837853
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100837853
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_RBM22
zf-CCCH_3
TFIIA
Motif
Other DBs
NCBI-GeneID:
100837853
NCBI-ProteinID:
XP_003563404
UniProt:
I1GW41
LinkDB
All DBs
Position
1:complement(28032744..28037658)
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AA seq
653 aa
AA seq
DB search
MDDGDLSFDFEGGLDPAPAAGGLAPSSGDAGAIGGGGMDGIGHGRGRGRGSYRQTVCRHW
LRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNMYKMGFCP
NGPHCRYKHVKLPGPPPPVEEVLAKILQVRTSGFNKFNQHRGNNYNQQGERPRPPHGSGL
PNQNSTENATAVTMQPAAGQQAQTMNQQPPQKQQPQQQKPNTNDQVQGVPNGSSNQTTRI
ATPLPQGTTRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESMENVILIFSINRT
RNFQGCAKMTSRIGGYIGGGNWKSANGTAHYGRNFSLQWLKLCELSFQKTHHLRNPYNDN
LPVKISRDCQELEPFIGEQLASLLYLEPDSELTEMLVAAEAKREEEKAKGVSADEATDNQ
DIVLFDDNEEEEEEESEEEEENNGPESQGRGRGRGMMWPPHMGMPRAVGPLMGARGFPPN
MMGDGFGFGNAFGMPDPFGMPRGFPPFGPRFPGEFARGPMPGMVFPGRPPQHGGLFPMGL
EMMMGPGRGGPLMGGMGMGGPGRPNRPIGMAPFMPPPPPRPVKRGDQRRPGGGDRSDRYE
TGSEQGSRGHDTAGNSAADGARSQSGDKYGRSSFRDDDSESDEEAAPRRSKKR
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacctcagcttcgacttcgagggcggcctcgacccggccccggcggct
ggggggctggcgccgtcctcgggcgatgccggcgctatcgggggcgggggcatggacgga
atcgggcacgggcgaggccgcggccgcgggagctataggcagacggtgtgccggcactgg
ctgcggggcctgtgcatgaagggagaggcctgcggattcctgcaccagttcgacaaggcg
cgcatgcccgtatgccgcttcttccgcgacttcggcgagtgccgggagcccgattgcgct
tacaagcactcctacgacgacgtcaaggagtgcaacatgtacaagatggggttttgccct
aatggcccacattgccggtacaagcatgtcaagctacctggaccaccacctcctgttgag
gaagttcttgcaaagattctgcaagtgcgcacatccggtttcaacaagtttaatcagcac
aggggcaataactataatcaacagggggagagacctcgacctccacatggttcaggctta
cctaaccaaaattcgacagaaaatgctaccgccgtgacaatgcaaccagctgctgggcaa
caagctcaaacgatgaatcaacagcctccgcagaagcagcagccgcagcagcagaagcca
aatacaaatgaccaggttcaaggtgttccaaatggatcatctaatcaaaccaccagaatt
gcaacaccccttccacaagggacaactaggtacttcattgttaagagttgcaatcgggag
aacctggaaatatcagttcagcaaggcatctgggctactcaaaggagtaatgaggctaaa
ctaaatgaagcttttgaatccatggagaatgtcattttaatattttcaatcaatagaacc
cgtaatttccagggctgtgcaaagatgacttctaggattggtggttacattggtggtgga
aattggaagtctgctaatgggacagcacattatggtcggaacttctctttacagtggctt
aagctttgtgaattatcatttcagaagactcaccatcttcgtaatccatacaatgacaat
cttcctgttaagatcagtcgagattgccaagaattagaacctttcattggcgagcaattg
gcttctctgctttatctggagccagacagtgagcttacggaaatgctagttgcagcagag
gccaagagagaagaggagaaggcaaagggagtcagtgctgatgaggcaactgacaaccaa
gatattgtgctgtttgatgacaatgaagaagaggaagaagaggaaagtgaggaggaggaa
gaaaacaatggcccagaatctcaaggaagaggaaggggaaggggaatgatgtggccacct
catatgggcatgccacgggccgttggaccactgatgggagcgcgtggcttccctccgaac
atgatgggcgacggctttggtttcggcaatgcctttggcatgcctgatccttttggcatg
cctcgtggtttcccaccgttcggcccaaggtttcccggtgagttcgccagaggtcctatg
cctggtatggtcttccctggaaggcctccgcagcacggtggcctcttccccatgggtctc
gagatgatgatgggccctggccgaggaggaccgctcatgggaggcatgggaatgggcggg
cctgggcgaccaaatcgtcccattggcatggctcccttcatgcccccgccacctccgcgc
cccgtgaaacggggggaccagagaaggccaggaggtggtgacaggagcgacaggtatgaa
actgggtcagagcagggaagcaggggccatgacactgctgggaattctgcagcagacgga
gccaggtcccaatctggggacaagtatggcagaagctccttccgagacgatgacagtgag
agcgacgaggaagcggcgcctaggcgatccaagaaacgatag
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