KEGG   Brachypodium distachyon (stiff brome): 100837911
Entry
100837911         CDS       T01717                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03030  DNA replication
bdi03410  Base excision repair
bdi03420  Nucleotide excision repair
bdi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100837911
   03410 Base excision repair
    100837911
   03420 Nucleotide excision repair
    100837911
   03430 Mismatch repair
    100837911
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bdi03032]
    100837911
   03036 Chromosome and associated proteins [BR:bdi03036]
    100837911
   03400 DNA repair and recombination proteins [BR:bdi03400]
    100837911
DNA replication proteins [BR:bdi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    100837911
  DNA Replication Termination Factors
   ELG1-RFC complex
    100837911
Chromosome and associated proteins [BR:bdi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    100837911
DNA repair and recombination proteins [BR:bdi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     100837911
  Check point factors
   HRAD17(Rad24)-RFC complex
    100837911
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 RuvB_N Sigma54_activ_2 Mg_chelatase AAA_22 DUF815 AAA_5 nSTAND3 AAA_11 AAA_16 ABC_tran AAA_2 NPHP3_N AAA_29 ATPase_2 FtsK_SpoIIIE RsgA_GTPase DUF5906 TsaE RNA_helicase AAA_24
Other DBs
NCBI-GeneID: 100837911
NCBI-ProteinID: XP_003557833
UniProt: I1GME4
LinkDB
Position
1:4071050..4075232
AA seq 354 aa
MLWVDKHRPKALDKVTVHEQVAQNLKKLVAEQDCPHLLFYGPPGSGKKTLIMALIKQMFG
AGAEKVKMENKTWKIDTGTRTFDLELVMLSSSHHVEMNPSDAGFQDRYVVQEVIKEMAKS
RPIDAKGKRAFKVLILNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRVNAPTEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY
PFTSNQVPPPLDWEKYVSEIATDILSEQSPKRLYSVRQKFYELLVNCIPPESILKKLLSE
LMKKLDSDLKHEICHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtggacaagcaccggccaaaagccctagacaaggtcaccgtccatgagcaa
gtcgcgcagaacctcaagaagctcgttgcggagcaggattgcccgcacctcctcttctac
gggccgccggggtccggcaagaaaaccctaatcatggcgctcatcaagcagatgtttggc
gcaggtgcagagaaggtgaagatggagaacaagacgtggaagattgatactgggacaagg
acatttgacctagagttggtgatgttgtcaagttcccaccatgtcgagatgaaccccagc
gatgcagggtttcaggacaggtatgttgtccaggaggtcatcaaagaaatggcgaagagc
aggccaattgatgcgaaaggcaagagagcatttaaagtgctcatcctaaatgaagttgac
aagctctcacgagaagcacagcattccctccgtaggacaatggagaagtacagtgcatca
tgtaggttgatattatgctgtaatagctcctcaaaggtgacagaagccgtaaggtcccgt
tgcttgaatgtgcgagtgaatgcacctactgaagatcagattgtacaagttctggaattc
attgggaagaaagaaaacttgcaacttccatttggatttgctgctcggatagcagctcag
tcaaaccgcaacttgaggcgagcaatattatttttcgagacatgcaaagtccagcaatat
ccgtttacatcgaatcaagtgccgcctcctcttgactgggagaagtatgtgtctgaaata
gcaactgatatcttgagcgaacaaagtccgaaaaggctctattctgtacgccagaaattc
tacgagttacttgtcaactgtatcccacctgaaagcatcttgaagaagttgttgtcggag
ttaatgaagaaattagactctgatttgaaacatgaaatttgtcactgggctgcacactat
gaacacaagatgcgtcttgggtccaaggcaatttttcatctggaagcttttgtggccaag
ttcatgagcatttataaggagttcctggtggccacatttggttaa

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