Brachypodium distachyon (stiff brome): 100837911
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Entry
100837911 CDS
T01717
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03030
DNA replication
bdi03410
Base excision repair
bdi03420
Nucleotide excision repair
bdi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100837911
03410 Base excision repair
100837911
03420 Nucleotide excision repair
100837911
03430 Mismatch repair
100837911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdi03032
]
100837911
03036 Chromosome and associated proteins [BR:
bdi03036
]
100837911
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100837911
DNA replication proteins [BR:
bdi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100837911
DNA Replication Termination Factors
ELG1-RFC complex
100837911
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
100837911
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100837911
Check point factors
HRAD17(Rad24)-RFC complex
100837911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA
Rad17
RuvB_N
Sigma54_activ_2
Mg_chelatase
AAA_22
DUF815
AAA_5
nSTAND3
AAA_11
AAA_16
ABC_tran
AAA_2
NPHP3_N
AAA_29
ATPase_2
FtsK_SpoIIIE
RsgA_GTPase
DUF5906
TsaE
RNA_helicase
AAA_24
Motif
Other DBs
NCBI-GeneID:
100837911
NCBI-ProteinID:
XP_003557833
UniProt:
I1GME4
LinkDB
All DBs
Position
1:4071050..4075232
Genome browser
AA seq
354 aa
AA seq
DB search
MLWVDKHRPKALDKVTVHEQVAQNLKKLVAEQDCPHLLFYGPPGSGKKTLIMALIKQMFG
AGAEKVKMENKTWKIDTGTRTFDLELVMLSSSHHVEMNPSDAGFQDRYVVQEVIKEMAKS
RPIDAKGKRAFKVLILNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRVNAPTEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY
PFTSNQVPPPLDWEKYVSEIATDILSEQSPKRLYSVRQKFYELLVNCIPPESILKKLLSE
LMKKLDSDLKHEICHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVATFG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgggtggacaagcaccggccaaaagccctagacaaggtcaccgtccatgagcaa
gtcgcgcagaacctcaagaagctcgttgcggagcaggattgcccgcacctcctcttctac
gggccgccggggtccggcaagaaaaccctaatcatggcgctcatcaagcagatgtttggc
gcaggtgcagagaaggtgaagatggagaacaagacgtggaagattgatactgggacaagg
acatttgacctagagttggtgatgttgtcaagttcccaccatgtcgagatgaaccccagc
gatgcagggtttcaggacaggtatgttgtccaggaggtcatcaaagaaatggcgaagagc
aggccaattgatgcgaaaggcaagagagcatttaaagtgctcatcctaaatgaagttgac
aagctctcacgagaagcacagcattccctccgtaggacaatggagaagtacagtgcatca
tgtaggttgatattatgctgtaatagctcctcaaaggtgacagaagccgtaaggtcccgt
tgcttgaatgtgcgagtgaatgcacctactgaagatcagattgtacaagttctggaattc
attgggaagaaagaaaacttgcaacttccatttggatttgctgctcggatagcagctcag
tcaaaccgcaacttgaggcgagcaatattatttttcgagacatgcaaagtccagcaatat
ccgtttacatcgaatcaagtgccgcctcctcttgactgggagaagtatgtgtctgaaata
gcaactgatatcttgagcgaacaaagtccgaaaaggctctattctgtacgccagaaattc
tacgagttacttgtcaactgtatcccacctgaaagcatcttgaagaagttgttgtcggag
ttaatgaagaaattagactctgatttgaaacatgaaatttgtcactgggctgcacactat
gaacacaagatgcgtcttgggtccaaggcaatttttcatctggaagcttttgtggccaag
ttcatgagcatttataaggagttcctggtggccacatttggttaa
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