Brachypodium distachyon (stiff brome): 100838182
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Entry
100838182 CDS
T01717
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100838182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100838182
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100838182
mRNA degradation factors
5'-3' decay
Decapping complex
100838182
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
100838182
NCBI-ProteinID:
XP_003569904
UniProt:
I1HS15
LinkDB
All DBs
Position
2
Genome browser
AA seq
805 aa
AA seq
DB search
MRGVKADGGGGASASSGADSFDAGQYAFFGREPHEGVELGCLEVDGGDVNGGGFSGAEDG
LYRLSSVGEEIESLSNLSDVDDLASTFAKLNRTVSGTRNPGVIGDRRSISRGSSFTVDWD
EDVEFPNWQDQDILENEEFQEGQKRWWSQSHSLVHQGDSMPLSRTSSYPQQPLQHRSSEP
IVAPKSPSFTSFPPPGGRSPYPAQGLTRHGSIPSFGAGLQMGSPSMPLPGSPYHMAGLPH
GLPYGGGMPFAGPNLSINNSMQTHWSNQANLFATEHLNLLPNLLQKQISLPNNPMSSLLF
SQQQQRLAQLQPSHQNYLNIPPHLFYHHHSPEITGRFDSASSLPSSRDKRSRSGRGKHSL
RFSQPPSDIGSQNGDTGGLKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQACMAK
KGSNSRQKANFSPTSMKDLPSKSRSSSDQHAYLQVDALGRVSFSSIRRPPSLLEVDLPSS
GECSHDQKSTVRPLEKEPMLAAKVTVEDALGLLLEVDDTDRMLQSSQAQDNSFQLRRRRQ
VLLEGLAASLQLVDPLGPSKSAHSSSLAPKDDIVFLRIVSLPKGRKLLARYLRLLVPGSE
LTRIVCMAIFRHLRFLFGGLPSDSSAADTTIALAKTVSSCVHHMELGALCACLAAVVCSS
EQPPLRPLGSPAGDGASLIIKSVLDRATELLTDHHAVSSYTPSNRALWQASFDAFFGLLT
KYCLSKYESILQMFVMQGSGSAIGSEASQATSREMPVELLRASLHHTNEQQRQMLLDFAQ
RTTPATGFNPPGPSGGHITSESVPG
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcgtcaaggcggacggcggtggcggcgcttccgcctcctccggcgcagatagt
tttgatgctgggcagtatgctttcttcggaagggagccgcacgaaggggtcgagctaggt
tgcttggaggttgatggtggcgatgtcaatggtggtggattcagcggagcggaagatggg
ttgtaccggctctcctcggttggagaagagattgagagtttaagtaacttgtcggacgtt
gatgatcttgcaagcacttttgcaaagttgaaccgaactgttagtggaacacgtaatcct
ggtgtcattggtgacagaagatccatttcaagaggaagttcttttactgttgattgggat
gaggatgtagagtttcctaactggcaagatcaggatatattagaaaatgaggagttccag
gaaggtcaaaaaagatggtggtcgcagtcgcattccttggtgcatcaaggggactccatg
ccattgagccgaacatcttcctatcctcagcagccactgcagcatcgttcaagtgaacct
atcgtagcaccaaaatctccttcatttacctcgtttccgccaccaggtggtagatcacca
tatcctgctcagggtcttacacgtcatgggagcatcccgtcatttggagctgggctacaa
atgggttctcctagcatgccactgccaggttctccgtatcatatggctggattacctcat
ggactaccatatggaggaggcatgccttttgccggtcctaacctgtctataaacaattca
atgcaaactcactggtcaaaccaagccaacctattcgctacggagcaccttaatctactg
ccaaacttattgcagaaacagatatcgcttccgaataacccaatgtcatcattgctattt
tctcagcaacaacagagattagcacagctccaaccatcccatcagaattacctaaatata
ccaccccacctattctaccatcatcactccccagagataacaggcaggtttgattctgct
agcagtcttccttcgtcaagagacaagagatcaagatcaggaagggggaaacacagttta
cgtttttctcaaccaccatctgatattggtagtcaaaatggtgatactggtggactaaag
tttagatccaagtacatgtcatctgaagagatcgagtctatattaagaatgcagcactca
gcaagtcacagcagtgatccttatgttgttgattattaccatcaagcttgcatggccaaa
aagggttccaattctaggcaaaaggccaacttctccccaacatcaatgaaagacttgccg
tccaagtcccggtcaagcagtgaccagcatgcatatcttcaggttgatgctcttgggaga
gtttctttctcttccatacgcaggcctccgtctcttcttgaagttgaccttccttcatca
ggtgagtgttctcatgatcagaagtctactgtgaggcctctggagaaagaaccaatgctg
gcagccaaggtcactgttgaagatgcccttggtcttcttcttgaggtggacgatactgac
aggatgctgcagtctagtcaggcacaggacaacagtttccaactgaggcgaaggcgacaa
gtcctccttgaaggtctagctgcatcacttcagcttgttgaccctcttggccccagcaaa
tctgctcattcatcttctttagcccctaaggatgacattgtctttcttcgaatagtttct
ctccccaaaggtcgtaagcttctggctcgttacctccgacttcttgttcctggaagcgag
ttaaccaggattgtatgcatggctatttttcgacacctgaggttcttgtttgggggatta
ccatcagattctagtgcagcagacacaacaattgctctggcaaagactgtttcgtcttgt
gttcaccacatggaactcggtgctctttgtgcttgccttgctgcagttgtttgttcctct
gaacaaccacctctccgccctcttggcagccctgctggtgacggggcttctcttatcatt
aaatcagtactggatcgagcaactgagttactgactgatcatcatgccgtgtccagctat
actccgtcgaaccgagccctctggcaggcatcttttgatgctttctttgggctccttaca
aaatattgtctcagtaagtacgaaagcattctgcagatgtttgtcatgcagggatcaggt
tctgcaattggatccgaagcctcccaagcaactagcagggagatgccagttgagcttcta
cgcgcaagccttcatcatacaaatgaacagcaacgccagatgttgcttgattttgctcag
agaaccacgccagcaaccggttttaatccccctggtcctagcggtggacacatcacttct
gaatctgttcctggttga
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